Model info
| Transcription factor | GLIS1 (GeneCards) | ||||||||
| Model | GLIS1_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 13 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hYGYGGGGGGTMd | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 492 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | GLI-like factors {2.3.3.1} | ||||||||
| HGNC | HGNC:29525 | ||||||||
| EntrezGene | GeneID:148979 (SSTAR profile) | ||||||||
| UniProt ID | GLIS1_HUMAN | ||||||||
| UniProt AC | Q8NBF1 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | GLIS1 expression | ||||||||
| ReMap ChIP-seq dataset list | GLIS1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 91.5 | 90.5 | 58.5 | 251.5 |
| 02 | 53.25 | 310.25 | 46.25 | 82.25 |
| 03 | 29.5 | 20.5 | 418.5 | 23.5 |
| 04 | 21.75 | 93.75 | 20.75 | 355.75 |
| 05 | 15.25 | 13.25 | 446.25 | 17.25 |
| 06 | 15.25 | 15.25 | 449.25 | 12.25 |
| 07 | 6.25 | 6.25 | 455.25 | 24.25 |
| 08 | 18.25 | 9.25 | 448.25 | 16.25 |
| 09 | 7.0 | 9.0 | 467.0 | 9.0 |
| 10 | 8.75 | 8.75 | 464.75 | 9.75 |
| 11 | 10.0 | 7.0 | 21.0 | 454.0 |
| 12 | 148.75 | 275.75 | 42.75 | 24.75 |
| 13 | 103.25 | 53.25 | 154.25 | 181.25 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.292 | -0.302 | -0.73 | 0.709 |
| 02 | -0.821 | 0.918 | -0.958 | -0.396 |
| 03 | -1.389 | -1.731 | 1.216 | -1.604 |
| 04 | -1.676 | -0.268 | -1.72 | 1.054 |
| 05 | -2.003 | -2.13 | 1.28 | -1.891 |
| 06 | -2.003 | -2.003 | 1.286 | -2.2 |
| 07 | -2.771 | -2.771 | 1.3 | -1.574 |
| 08 | -1.839 | -2.445 | 1.284 | -1.946 |
| 09 | -2.679 | -2.469 | 1.325 | -2.469 |
| 10 | -2.493 | -2.493 | 1.32 | -2.4 |
| 11 | -2.378 | -2.679 | -1.709 | 1.297 |
| 12 | 0.188 | 0.8 | -1.034 | -1.555 |
| 13 | -0.173 | -0.821 | 0.224 | 0.384 |