Transcription factor | Hand1 | ||||||||
Model | HAND1_MOUSE.H11DI.0.C | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 19 | ||||||||
Quality | C | ||||||||
Motif rank | 0 | ||||||||
Consensus | nddvYCTGShhWnYvTCWn | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | 0.998 | ||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | 3 | ||||||||
Aligned words | 505 | ||||||||
TF family | Tal-related factors {1.2.3} | ||||||||
TF subfamily | Twist-like factors {1.2.3.2} | ||||||||
MGI | MGI:103577 | ||||||||
EntrezGene | GeneID:15110 (SSTAR profile) | ||||||||
UniProt ID | HAND1_MOUSE | ||||||||
UniProt AC | Q64279 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Hand1 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 16.0 | 9.0 | 71.0 | 13.0 | 39.0 | 12.0 | 9.0 | 37.0 | 44.0 | 23.0 | 69.0 | 25.0 | 4.0 | 15.0 | 96.0 | 18.0 |
02 | 13.0 | 8.0 | 67.0 | 15.0 | 9.0 | 9.0 | 8.0 | 33.0 | 36.0 | 38.0 | 116.0 | 55.0 | 11.0 | 12.0 | 55.0 | 15.0 |
03 | 6.0 | 23.0 | 34.0 | 6.0 | 20.0 | 16.0 | 10.0 | 21.0 | 41.0 | 49.0 | 126.0 | 30.0 | 20.0 | 34.0 | 59.0 | 5.0 |
04 | 1.0 | 35.0 | 1.0 | 50.0 | 7.0 | 39.0 | 0.0 | 76.0 | 11.0 | 110.0 | 19.0 | 89.0 | 1.0 | 22.0 | 8.0 | 31.0 |
05 | 1.0 | 19.0 | 0.0 | 0.0 | 11.0 | 192.0 | 1.0 | 2.0 | 1.0 | 26.0 | 1.0 | 0.0 | 3.0 | 241.0 | 2.0 | 0.0 |
06 | 0.0 | 0.0 | 0.0 | 16.0 | 5.0 | 0.0 | 0.0 | 473.0 | 0.0 | 0.0 | 0.0 | 4.0 | 0.0 | 0.0 | 0.0 | 2.0 |
07 | 0.0 | 0.0 | 5.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 493.0 | 1.0 |
08 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 1.0 | 99.0 | 329.0 | 69.0 | 0.0 | 0.0 | 1.0 | 0.0 |
09 | 0.0 | 0.0 | 1.0 | 0.0 | 13.0 | 13.0 | 4.0 | 69.0 | 89.0 | 103.0 | 45.0 | 93.0 | 2.0 | 15.0 | 15.0 | 38.0 |
10 | 31.0 | 18.0 | 29.0 | 26.0 | 19.0 | 26.0 | 0.0 | 86.0 | 22.0 | 14.0 | 11.0 | 18.0 | 26.0 | 47.0 | 18.0 | 109.0 |
11 | 43.0 | 8.0 | 3.0 | 44.0 | 47.0 | 5.0 | 1.0 | 52.0 | 28.0 | 9.0 | 2.0 | 19.0 | 53.0 | 41.0 | 6.0 | 139.0 |
12 | 46.0 | 20.0 | 76.0 | 29.0 | 4.0 | 27.0 | 2.0 | 30.0 | 1.0 | 5.0 | 4.0 | 2.0 | 42.0 | 64.0 | 58.0 | 90.0 |
13 | 0.0 | 28.0 | 3.0 | 62.0 | 4.0 | 26.0 | 0.0 | 86.0 | 6.0 | 26.0 | 14.0 | 94.0 | 7.0 | 47.0 | 15.0 | 82.0 |
14 | 4.0 | 6.0 | 5.0 | 2.0 | 44.0 | 36.0 | 20.0 | 27.0 | 8.0 | 17.0 | 5.0 | 2.0 | 28.0 | 87.0 | 182.0 | 27.0 |
15 | 0.0 | 0.0 | 4.0 | 80.0 | 4.0 | 7.0 | 0.0 | 135.0 | 6.0 | 7.0 | 20.0 | 179.0 | 1.0 | 3.0 | 1.0 | 53.0 |
16 | 0.0 | 7.0 | 2.0 | 2.0 | 3.0 | 12.0 | 2.0 | 0.0 | 1.0 | 20.0 | 2.0 | 2.0 | 8.0 | 386.0 | 22.0 | 31.0 |
17 | 9.0 | 1.0 | 1.0 | 1.0 | 263.0 | 41.0 | 17.0 | 104.0 | 6.0 | 9.0 | 1.0 | 12.0 | 17.0 | 3.0 | 5.0 | 10.0 |
18 | 76.0 | 79.0 | 102.0 | 38.0 | 18.0 | 12.0 | 4.0 | 20.0 | 9.0 | 4.0 | 8.0 | 3.0 | 22.0 | 33.0 | 44.0 | 28.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -0.658 | -1.215 | 0.814 | -0.86 | 0.219 | -0.938 | -1.215 | 0.167 | 0.339 | -0.302 | 0.785 | -0.22 | -1.975 | -0.721 | 1.114 | -0.543 |
02 | -0.86 | -1.328 | 0.756 | -0.721 | -1.215 | -1.215 | -1.328 | 0.054 | 0.14 | 0.193 | 1.303 | 0.56 | -1.022 | -0.938 | 0.56 | -0.721 |
03 | -1.6 | -0.302 | 0.083 | -1.6 | -0.439 | -0.658 | -1.114 | -0.392 | 0.269 | 0.445 | 1.385 | -0.04 | -0.439 | 0.083 | 0.63 | -1.77 |
04 | -3.126 | 0.112 | -3.126 | 0.465 | -1.454 | 0.219 | -4.4 | 0.881 | -1.022 | 1.25 | -0.49 | 1.039 | -3.126 | -0.346 | -1.328 | -0.008 |
05 | -3.126 | -0.49 | -4.4 | -4.4 | -1.022 | 1.805 | -3.126 | -2.584 | -3.126 | -0.181 | -3.126 | -4.4 | -2.234 | 2.032 | -2.584 | -4.4 |
06 | -4.4 | -4.4 | -4.4 | -0.658 | -1.77 | -4.4 | -4.4 | 2.706 | -4.4 | -4.4 | -4.4 | -1.975 | -4.4 | -4.4 | -4.4 | -2.584 |
07 | -4.4 | -4.4 | -1.77 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -3.126 | 2.747 | -3.126 |
08 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -3.126 | -3.126 | 1.145 | 2.343 | 0.785 | -4.4 | -4.4 | -3.126 | -4.4 |
09 | -4.4 | -4.4 | -3.126 | -4.4 | -0.86 | -0.86 | -1.975 | 0.785 | 1.039 | 1.184 | 0.361 | 1.082 | -2.584 | -0.721 | -0.721 | 0.193 |
10 | -0.008 | -0.543 | -0.074 | -0.181 | -0.49 | -0.181 | -4.4 | 1.004 | -0.346 | -0.788 | -1.022 | -0.543 | -0.181 | 0.404 | -0.543 | 1.241 |
11 | 0.316 | -1.328 | -2.234 | 0.339 | 0.404 | -1.77 | -3.126 | 0.504 | -0.108 | -1.215 | -2.584 | -0.49 | 0.523 | 0.269 | -1.6 | 1.483 |
12 | 0.383 | -0.439 | 0.881 | -0.074 | -1.975 | -0.144 | -2.584 | -0.04 | -3.126 | -1.77 | -1.975 | -2.584 | 0.293 | 0.711 | 0.613 | 1.05 |
13 | -4.4 | -0.108 | -2.234 | 0.679 | -1.975 | -0.181 | -4.4 | 1.004 | -1.6 | -0.181 | -0.788 | 1.093 | -1.454 | 0.404 | -0.721 | 0.957 |
14 | -1.975 | -1.6 | -1.77 | -2.584 | 0.339 | 0.14 | -0.439 | -0.144 | -1.328 | -0.599 | -1.77 | -2.584 | -0.108 | 1.016 | 1.752 | -0.144 |
15 | -4.4 | -4.4 | -1.975 | 0.932 | -1.975 | -1.454 | -4.4 | 1.454 | -1.6 | -1.454 | -0.439 | 1.735 | -3.126 | -2.234 | -3.126 | 0.523 |
16 | -4.4 | -1.454 | -2.584 | -2.584 | -2.234 | -0.938 | -2.584 | -4.4 | -3.126 | -0.439 | -2.584 | -2.584 | -1.328 | 2.502 | -0.346 | -0.008 |
17 | -1.215 | -3.126 | -3.126 | -3.126 | 2.119 | 0.269 | -0.599 | 1.194 | -1.6 | -1.215 | -3.126 | -0.938 | -0.599 | -2.234 | -1.77 | -1.114 |
18 | 0.881 | 0.92 | 1.174 | 0.193 | -0.543 | -0.938 | -1.975 | -0.439 | -1.215 | -1.975 | -1.328 | -2.234 | -0.346 | 0.054 | 0.339 | -0.108 |