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Model info
Transcription factorHmga1
ModelHMGA1_MOUSE.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length7
Quality
D
Motif rank
0
ConsensusnWATTWd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words97
TF familyHMGA factors {8.2.1}
TF subfamilyHMGA1 (HMGI(Y)) {8.2.1.0.1}
MGIMGI:96160
EntrezGeneGeneID:111241; 15361
(SSTAR profile)
UniProt IDHMGA1_MOUSE
UniProt ACP17095
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.5300899999999995
0.0005 6.063829999999999
0.0001 6.3052
GTEx tissue expression atlas Hmga1 expression
Motifs in JASPAR
PCM
ACGT
0124.57117.01933.41719.284
0229.8847.8760.056.531
0379.9423.7760.010.573
040.00.00.094.29
051.9420.9710.091.378
0622.5485.8268.84657.071
0719.33810.611.03153.322
PWM
ACGT
010.04-0.3080.335-0.191
020.227-1.009-3.0790.848
031.188-1.615-3.079-0.747
04-3.079-3.079-3.0791.351
05-2.083-2.462-3.0791.32
06-0.042-1.267-0.9060.857
07-0.188-0.744-0.7080.79