Model info
| Transcription factor | Hmga2 | ||||||||
| Model | HMGA2_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 15 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | AATAWhSSSSAATAT | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 75 | ||||||||
| TF family | HMGA factors {8.2.1} | ||||||||
| TF subfamily | HMGA2 (HMGI-C) {8.2.1.0.2} | ||||||||
| MGI | MGI:101761 | ||||||||
| EntrezGene | GeneID:15364 (SSTAR profile) | ||||||||
| UniProt ID | HMGA2_MOUSE | ||||||||
| UniProt AC | P52927 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Hmga2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 71.752 | 1.241 | 1.241 | 1.241 |
| 02 | 54.621 | 0.0 | 0.0 | 20.855 |
| 03 | 11.917 | 0.0 | 0.0 | 63.559 |
| 04 | 44.69 | 0.0 | 0.0 | 30.786 |
| 05 | 39.724 | 1.986 | 0.993 | 32.772 |
| 06 | 12.91 | 20.855 | 8.938 | 32.772 |
| 07 | 0.0 | 41.71 | 29.793 | 3.972 |
| 08 | 1.986 | 24.828 | 46.676 | 1.986 |
| 09 | 0.0 | 37.738 | 32.772 | 4.966 |
| 10 | 1.986 | 31.779 | 40.717 | 0.993 |
| 11 | 71.503 | 0.0 | 2.979 | 0.993 |
| 12 | 59.586 | 0.993 | 0.0 | 14.897 |
| 13 | 1.986 | 0.993 | 0.0 | 72.497 |
| 14 | 59.586 | 0.0 | 0.993 | 14.897 |
| 15 | 1.49 | 1.49 | 1.49 | 71.007 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.295 | -2.151 | -2.151 | -2.151 |
| 02 | 1.027 | -2.915 | -2.915 | 0.095 |
| 03 | -0.428 | -2.915 | -2.915 | 1.176 |
| 04 | 0.83 | -2.915 | -2.915 | 0.468 |
| 05 | 0.716 | -1.872 | -2.264 | 0.529 |
| 06 | -0.355 | 0.095 | -0.689 | 0.529 |
| 07 | -2.915 | 0.763 | 0.437 | -1.373 |
| 08 | -1.872 | 0.261 | 0.873 | -1.872 |
| 09 | -2.915 | 0.666 | 0.529 | -1.194 |
| 10 | -1.872 | 0.499 | 0.74 | -2.264 |
| 11 | 1.292 | -2.915 | -1.592 | -2.264 |
| 12 | 1.112 | -2.264 | -2.915 | -0.222 |
| 13 | -1.872 | -2.264 | -2.915 | 1.305 |
| 14 | 1.112 | -2.915 | -2.264 | -0.222 |
| 15 | -2.049 | -2.049 | -2.049 | 1.285 |