Model info
| Transcription factor | TCF12 (GeneCards) | ||||||||
| Model | HTF4_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nSCAGSTGKS | ||||||||
| Best auROC (human) | 0.915 | ||||||||
| Best auROC (mouse) | 0.987 | ||||||||
| Peak sets in benchmark (human) | 49 | ||||||||
| Peak sets in benchmark (mouse) | 10 | ||||||||
| Aligned words | 502 | ||||||||
| TF family | E2A-related factors {1.2.1} | ||||||||
| TF subfamily | HTF-4 (TCF-12, HEB) {1.2.1.0.3} | ||||||||
| HGNC | HGNC:11623 | ||||||||
| EntrezGene | GeneID:6938 (SSTAR profile) | ||||||||
| UniProt ID | HTF4_HUMAN | ||||||||
| UniProt AC | Q99081 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | TCF12 expression | ||||||||
| ReMap ChIP-seq dataset list | TCF12 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 148.0 | 60.0 | 131.0 | 161.0 |
| 02 | 71.0 | 170.0 | 247.0 | 12.0 |
| 03 | 11.0 | 474.0 | 11.0 | 4.0 |
| 04 | 422.0 | 7.0 | 3.0 | 68.0 |
| 05 | 7.0 | 60.0 | 419.0 | 14.0 |
| 06 | 28.0 | 305.0 | 159.0 | 8.0 |
| 07 | 9.0 | 0.0 | 5.0 | 486.0 |
| 08 | 2.0 | 4.0 | 470.0 | 24.0 |
| 09 | 49.0 | 16.0 | 159.0 | 276.0 |
| 10 | 9.0 | 80.0 | 337.0 | 74.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.167 | -0.721 | 0.046 | 0.25 |
| 02 | -0.556 | 0.304 | 0.675 | -2.234 |
| 03 | -2.311 | 1.324 | -2.311 | -3.126 |
| 04 | 1.208 | -2.694 | -3.325 | -0.599 |
| 05 | -2.694 | -0.721 | 1.201 | -2.096 |
| 06 | -1.454 | 0.885 | 0.238 | -2.584 |
| 07 | -2.484 | -4.4 | -2.961 | 1.349 |
| 08 | -3.573 | -3.126 | 1.315 | -1.6 |
| 09 | -0.918 | -1.975 | 0.238 | 0.785 |
| 10 | -2.484 | -0.439 | 0.984 | -0.516 |