Model info
| Transcription factor | Hoxa10 | ||||||||
| Model | HXA10_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 12 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dnYnRTTTATGh | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 10 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | HOX9-13 {3.1.1.8} | ||||||||
| MGI | MGI:96171 | ||||||||
| EntrezGene | GeneID:15395 (SSTAR profile) | ||||||||
| UniProt ID | HXA10_MOUSE | ||||||||
| UniProt AC | P31310 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Hoxa10 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.813 | 0.714 | 3.791 | 3.681 |
| 02 | 5.165 | 1.978 | 1.978 | 0.879 |
| 03 | 0.0 | 2.967 | 0.989 | 6.044 |
| 04 | 3.956 | 0.989 | 3.956 | 1.099 |
| 05 | 5.055 | 0.879 | 3.077 | 0.989 |
| 06 | 0.879 | 0.0 | 0.0 | 9.121 |
| 07 | 0.0 | 0.0 | 0.0 | 10.0 |
| 08 | 0.989 | 0.0 | 0.0 | 9.011 |
| 09 | 10.0 | 0.0 | 0.0 | 0.0 |
| 10 | 0.0 | 0.0 | 0.0 | 10.0 |
| 11 | 0.989 | 0.0 | 8.022 | 0.989 |
| 12 | 4.176 | 1.758 | 0.989 | 3.077 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.253 | -0.869 | 0.351 | 0.325 |
| 02 | 0.624 | -0.186 | -0.186 | -0.749 |
| 03 | -1.676 | 0.141 | -0.676 | 0.767 |
| 04 | 0.388 | -0.676 | 0.388 | -0.608 |
| 05 | 0.605 | -0.749 | 0.172 | -0.676 |
| 06 | -0.749 | -1.676 | -1.676 | 1.148 |
| 07 | -1.676 | -1.676 | -1.676 | 1.235 |
| 08 | -0.676 | -1.676 | -1.676 | 1.137 |
| 09 | 1.235 | -1.676 | -1.676 | -1.676 |
| 10 | -1.676 | -1.676 | -1.676 | 1.235 |
| 11 | -0.676 | -1.676 | 1.028 | -0.676 |
| 12 | 0.435 | -0.276 | -0.676 | 0.172 |