Model info
| Transcription factor | Hoxa1 | ||||||||
| Model | HXA1_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 10 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nTGATGGATG | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 8 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | HOX1 {3.1.1.1} | ||||||||
| MGI | MGI:96170 | ||||||||
| EntrezGene | |||||||||
| UniProt ID | HXA1_MOUSE | ||||||||
| UniProt AC | P09022 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Hoxa1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.216 | 1.324 | 1.324 | 4.135 |
| 02 | 0.0 | 0.0 | 2.919 | 5.081 |
| 03 | 1.081 | 0.0 | 6.919 | 0.0 |
| 04 | 8.0 | 0.0 | 0.0 | 0.0 |
| 05 | 0.0 | 0.0 | 0.0 | 8.0 |
| 06 | 0.0 | 0.0 | 6.054 | 1.946 |
| 07 | 0.0 | 0.0 | 8.0 | 0.0 |
| 08 | 6.919 | 1.081 | 0.0 | 0.0 |
| 09 | 0.0 | 0.0 | 0.0 | 8.0 |
| 10 | 0.514 | 0.514 | 6.459 | 0.514 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.373 | -0.312 | -0.312 | 0.614 |
| 02 | -1.578 | -1.578 | 0.311 | 0.799 |
| 03 | -0.454 | -1.578 | 1.083 | -1.578 |
| 04 | 1.218 | -1.578 | -1.578 | -1.578 |
| 05 | -1.578 | -1.578 | -1.578 | 1.218 |
| 06 | -1.578 | -1.578 | 0.959 | -0.022 |
| 07 | -1.578 | -1.578 | 1.218 | -1.578 |
| 08 | 1.083 | -0.454 | -1.578 | -1.578 |
| 09 | -1.578 | -1.578 | -1.578 | 1.218 |
| 10 | -0.891 | -0.891 | 1.019 | -0.891 |