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Model info
Transcription factorHOXA9
(GeneCards)
ModelHXA9_HUMAN.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
B
Motif rank
0
ConsensusndTGATTYAYddbh
Best auROC (human)0.914
Best auROC (mouse)0.76
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)8
Aligned words502
TF familyHOX-related factors {3.1.1}
TF subfamilyHOX9-13 {3.1.1.8}
HGNCHGNC:5109
EntrezGeneGeneID:3205
(SSTAR profile)
UniProt IDHXA9_HUMAN
UniProt ACP31269
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.21596
0.0005 12.110415
0.0001 16.00616
GTEx tissue expression atlas HOXA9 expression
ReMap ChIP-seq dataset list HOXA9 datasets
Motifs in JASPAR
MA0594.1 (Hoxa9; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0149.014.041.018.065.08.02.014.077.012.026.020.038.011.050.038.0
0254.00.07.0168.09.00.00.036.015.02.05.097.07.00.08.075.0
039.00.071.05.02.00.00.00.05.00.013.02.043.02.0316.015.0
0455.00.00.04.02.00.00.00.0399.01.00.00.022.00.00.00.0
059.02.07.0460.00.00.00.01.00.00.00.00.00.00.00.04.0
063.00.00.06.00.00.00.02.01.00.00.06.021.00.09.0435.0
073.00.02.020.00.00.00.00.05.00.03.01.021.052.041.0335.0
0828.01.00.00.035.016.01.00.046.00.00.00.0341.07.08.00.0
097.068.025.0350.018.03.02.01.00.02.01.06.00.00.00.00.0
101.00.03.021.030.00.011.032.07.01.04.016.059.015.0203.080.0
1115.04.065.013.05.00.02.09.077.014.086.044.028.07.072.042.0
125.063.027.030.08.08.01.08.029.0116.031.049.017.050.021.020.0
136.021.018.014.050.078.013.096.011.019.019.031.017.027.027.036.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.48-0.7540.303-0.5090.76-1.294-2.55-0.7540.929-0.904-0.147-0.4050.228-0.9880.50.228
020.576-4.371-1.4211.706-1.181-4.371-4.3710.174-0.687-2.55-1.7361.159-1.421-4.371-1.2940.902
03-1.181-4.3710.848-1.736-2.55-4.371-4.371-4.371-1.736-4.371-0.826-2.550.35-2.552.337-0.687
040.594-4.371-4.371-1.942-2.55-4.371-4.371-4.3712.57-3.094-4.371-4.371-0.312-4.371-4.371-4.371
05-1.181-2.55-1.4212.712-4.371-4.371-4.371-3.094-4.371-4.371-4.371-4.371-4.371-4.371-4.371-1.942
06-2.2-4.371-4.371-1.566-4.371-4.371-4.371-2.55-3.094-4.371-4.371-1.566-0.357-4.371-1.1812.656
07-2.2-4.371-2.55-0.405-4.371-4.371-4.371-4.371-1.736-4.371-2.2-3.094-0.3570.5390.3032.395
08-0.074-3.094-4.371-4.3710.146-0.624-3.094-4.3710.417-4.371-4.371-4.3712.413-1.421-1.294-4.371
09-1.4210.805-0.1862.439-0.509-2.2-2.55-3.094-4.371-2.55-3.094-1.566-4.371-4.371-4.371-4.371
10-3.094-4.371-2.2-0.357-0.006-4.371-0.9880.058-1.421-3.094-1.942-0.6240.664-0.6871.8950.967
11-0.687-1.9420.76-0.826-1.736-4.371-2.55-1.1810.929-0.7541.0390.373-0.074-1.4210.8620.327
12-1.7360.729-0.11-0.006-1.294-1.294-3.094-1.294-0.041.3370.0260.48-0.5640.5-0.357-0.405
13-1.566-0.357-0.509-0.7540.50.942-0.8261.148-0.988-0.456-0.4560.026-0.564-0.11-0.110.174