Model info
| Transcription factor | Hoxb1 | ||||||||
| Model | HXB1_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 10 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | WGATGGATGG | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 15 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | HOX1 {3.1.1.1} | ||||||||
| MGI | MGI:96182 | ||||||||
| EntrezGene | GeneID:15407 (SSTAR profile) | ||||||||
| UniProt ID | HXB1_MOUSE | ||||||||
| UniProt AC | P17919 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Hoxb1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 4.571 | 0.0 | 1.016 | 9.254 |
| 02 | 0.0 | 0.0 | 14.84 | 0.0 |
| 03 | 14.84 | 0.0 | 0.0 | 0.0 |
| 04 | 0.0 | 0.0 | 0.0 | 14.84 |
| 05 | 0.0 | 0.0 | 9.254 | 5.586 |
| 06 | 0.0 | 0.0 | 14.84 | 0.0 |
| 07 | 14.84 | 0.0 | 0.0 | 0.0 |
| 08 | 0.0 | 0.0 | 0.0 | 14.84 |
| 09 | 0.0 | 2.539 | 12.301 | 0.0 |
| 10 | 1.016 | 1.016 | 12.809 | 0.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.179 | -1.872 | -0.953 | 0.817 |
| 02 | -1.872 | -1.872 | 1.264 | -1.872 |
| 03 | 1.264 | -1.872 | -1.872 | -1.872 |
| 04 | -1.872 | -1.872 | -1.872 | 1.264 |
| 05 | -1.872 | -1.872 | 0.817 | 0.356 |
| 06 | -1.872 | -1.872 | 1.264 | -1.872 |
| 07 | 1.264 | -1.872 | -1.872 | -1.872 |
| 08 | -1.872 | -1.872 | -1.872 | 1.264 |
| 09 | -1.872 | -0.311 | 1.085 | -1.872 |
| 10 | -0.953 | -0.953 | 1.123 | -1.872 |