Model info
| Transcription factor | Hoxc6 | ||||||||
| Model | HXC6_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 15 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | WTGATTTATTWCTTT | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 7 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | HOX6-7 {3.1.1.6} | ||||||||
| MGI | MGI:96197 | ||||||||
| EntrezGene | GeneID:15425 (SSTAR profile) | ||||||||
| UniProt ID | HXC6_MOUSE | ||||||||
| UniProt AC | P10629 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Hoxc6 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 4.638 | 0.146 | 1.021 | 1.196 |
| 02 | 0.0 | 0.0 | 0.0 | 7.0 |
| 03 | 0.0 | 0.0 | 7.0 | 0.0 |
| 04 | 7.0 | 0.0 | 0.0 | 0.0 |
| 05 | 0.0 | 0.0 | 0.0 | 7.0 |
| 06 | 0.0 | 0.0 | 0.0 | 7.0 |
| 07 | 0.0 | 0.0 | 1.05 | 5.95 |
| 08 | 7.0 | 0.0 | 0.0 | 0.0 |
| 09 | 0.0 | 0.0 | 0.0 | 7.0 |
| 10 | 0.0 | 0.0 | 1.05 | 5.95 |
| 11 | 5.075 | 0.583 | 0.292 | 1.05 |
| 12 | 0.0 | 5.367 | 1.05 | 0.583 |
| 13 | 1.05 | 0.0 | 0.0 | 5.95 |
| 14 | 0.0 | 0.0 | 0.0 | 7.0 |
| 15 | 0.146 | 0.146 | 1.196 | 5.513 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.829 | -1.263 | -0.395 | -0.285 |
| 02 | -1.525 | -1.525 | -1.525 | 1.208 |
| 03 | -1.525 | -1.525 | 1.208 | -1.525 |
| 04 | 1.208 | -1.525 | -1.525 | -1.525 |
| 05 | -1.525 | -1.525 | -1.525 | 1.208 |
| 06 | -1.525 | -1.525 | -1.525 | 1.208 |
| 07 | -1.525 | -1.525 | -0.375 | 1.057 |
| 08 | 1.208 | -1.525 | -1.525 | -1.525 |
| 09 | -1.525 | -1.525 | -1.525 | 1.208 |
| 10 | -1.525 | -1.525 | -0.375 | 1.057 |
| 11 | 0.911 | -0.737 | -1.056 | -0.375 |
| 12 | -1.525 | 0.962 | -0.375 | -0.737 |
| 13 | -0.375 | -1.525 | -1.525 | 1.057 |
| 14 | -1.525 | -1.525 | -1.525 | 1.208 |
| 15 | -1.263 | -1.263 | -0.285 | 0.987 |