Model info
| Transcription factor | IRX3 (GeneCards) | ||||||||
| Model | IRX3_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hndYWTGTWhd | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 383 | ||||||||
| TF family | TALE-type homeo domain factors {3.1.4} | ||||||||
| TF subfamily | IRX (Iroquois) {3.1.4.1} | ||||||||
| HGNC | HGNC:14360 | ||||||||
| EntrezGene | GeneID:79191 (SSTAR profile) | ||||||||
| UniProt ID | IRX3_HUMAN | ||||||||
| UniProt AC | P78415 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | IRX3 expression | ||||||||
| ReMap ChIP-seq dataset list | IRX3 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 143.0 | 38.0 | 35.0 | 165.0 |
| 02 | 81.75 | 79.75 | 76.75 | 142.75 |
| 03 | 151.75 | 28.75 | 35.75 | 164.75 |
| 04 | 19.25 | 255.25 | 15.25 | 91.25 |
| 05 | 252.0 | 2.0 | 59.0 | 68.0 |
| 06 | 0.0 | 2.0 | 0.0 | 379.0 |
| 07 | 5.0 | 0.0 | 372.0 | 4.0 |
| 08 | 0.0 | 0.0 | 0.0 | 381.0 |
| 09 | 178.25 | 18.75 | 7.75 | 176.25 |
| 10 | 155.5 | 78.5 | 71.5 | 75.5 |
| 11 | 89.5 | 54.5 | 57.5 | 179.5 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.401 | -0.896 | -0.975 | 0.543 |
| 02 | -0.15 | -0.175 | -0.212 | 0.399 |
| 03 | 0.46 | -1.163 | -0.955 | 0.541 |
| 04 | -1.54 | 0.976 | -1.754 | -0.042 |
| 05 | 0.963 | -3.323 | -0.47 | -0.331 |
| 06 | -4.176 | -3.323 | -4.176 | 1.369 |
| 07 | -2.702 | -4.176 | 1.351 | -2.87 |
| 08 | -4.176 | -4.176 | -4.176 | 1.375 |
| 09 | 0.62 | -1.565 | -2.349 | 0.608 |
| 10 | 0.484 | -0.19 | -0.282 | -0.228 |
| 11 | -0.061 | -0.547 | -0.495 | 0.626 |