Model info
| Transcription factor | Tcf4 | ||||||||
| Model | ITF2_MOUSE.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 9 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vCAGGTGYd | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 553 | ||||||||
| TF family | E2A-related factors {1.2.1} | ||||||||
| TF subfamily | SEF2 (E2-2, TCF-4, ITF-2, MITF) {1.2.1.0.2} | ||||||||
| MGI | MGI:98506 | ||||||||
| EntrezGene | GeneID:21413 (SSTAR profile) | ||||||||
| UniProt ID | ITF2_MOUSE | ||||||||
| UniProt AC | Q60722 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Tcf4 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 150.587 | 155.415 | 146.992 | 0.526 |
| 02 | 0.0 | 453.52 | 0.0 | 0.0 |
| 03 | 453.52 | 0.0 | 0.0 | 0.0 |
| 04 | 0.0 | 0.0 | 453.52 | 0.0 |
| 05 | 0.0 | 0.0 | 453.52 | 0.0 |
| 06 | 0.0 | 0.0 | 0.526 | 452.994 |
| 07 | 0.0 | 0.0 | 453.52 | 0.0 |
| 08 | 11.302 | 299.028 | 0.0 | 143.19 |
| 09 | 169.144 | 36.455 | 157.253 | 90.668 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.281 | 0.312 | 0.257 | -4.024 |
| 02 | -4.319 | 1.376 | -4.319 | -4.319 |
| 03 | 1.376 | -4.319 | -4.319 | -4.319 |
| 04 | -4.319 | -4.319 | 1.376 | -4.319 |
| 05 | -4.319 | -4.319 | 1.376 | -4.319 |
| 06 | -4.319 | -4.319 | -4.024 | 1.375 |
| 07 | -4.319 | -4.319 | 1.376 | -4.319 |
| 08 | -2.192 | 0.961 | -4.319 | 0.231 |
| 09 | 0.396 | -1.107 | 0.323 | -0.22 |