JUNB_HUMAN.H11MO.0.A motif - HOmo sapiens COmprehensive MOdel COllection

Check the newest release v12

Model info

Transcription factor

JUNB
(GeneCards)

Model

JUNB_HUMAN.H11MO.0.A

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

ChIP-Seq

Model release

HOCOMOCOv11

Model length

11

Quality

A

Motif rank

0

Consensus

dvTGAGTCAbh

Best auROC (human)

0.977

Best auROC (mouse)

0.919

Peak sets in benchmark (human)

8

Peak sets in benchmark (mouse)

25

Aligned words

500

TF family

Jun-related factors {1.1.1}

TF subfamily

Jun factors {1.1.1.1}

HGNC

EntrezGene

GeneID:3726
(SSTAR profile)

UniProt ID

UniProt AC

P17275
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	4.55932
0.0005	5.654745
0.0001	7.436135

GTEx tissue expression atlas

JUNB expression

ReMap ChIP-seq dataset list

Motifs in JASPAR

MA0490.1 (JUNB; Homo sapiens)

MA1132.1 (JUN::JUNB; Homo sapiens)

MA1134.1 (FOS::JUNB; Homo sapiens)

MA1135.1 (FOSB::JUNB; Homo sapiens)

MA1137.1 (FOSL1::JUNB; Homo sapiens)

MA1138.1 (FOSL2::JUNB; Homo sapiens)

PCM

	A	C	G	T
01	137.0	49.0	152.0	162.0
02	132.0	174.0	137.0	57.0
03	16.0	4.0	6.0	474.0
04	2.0	17.0	445.0	36.0
05	467.0	1.0	0.0	32.0
06	0.0	0.0	477.0	23.0
07	6.0	6.0	0.0	488.0
08	25.0	463.0	7.0	5.0
09	489.0	4.0	2.0	5.0
10	37.0	183.0	131.0	149.0
11	159.0	175.0	65.0	101.0

PWM

	A	C	G	T
01	0.091	-0.918	0.193	0.256
02	0.054	0.327	0.091	-0.771
03	-1.975	-3.126	-2.819	1.324
04	-3.573	-1.92	1.261	-1.215
05	1.309	-3.903	-4.4	-1.328
06	-4.4	-4.4	1.33	-1.64
07	-2.819	-2.819	-4.4	1.353
08	-1.561	1.3	-2.694	-2.961
09	1.355	-3.126	-3.573	-2.961
10	-1.189	0.377	0.046	0.174
11	0.238	0.333	-0.643	-0.21