Transcription factor | Klf4 | ||||||||
Model | KLF4_MOUSE.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 20 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | vdvdvdGGGYGKGGbnbvbv | ||||||||
Best auROC (human) | 0.889 | ||||||||
Best auROC (mouse) | 0.986 | ||||||||
Peak sets in benchmark (human) | 11 | ||||||||
Peak sets in benchmark (mouse) | 34 | ||||||||
Aligned words | 501 | ||||||||
TF family | Three-zinc finger Krüppel-related factors {2.3.1} | ||||||||
TF subfamily | Krüppel-like factors {2.3.1.2} | ||||||||
MGI | MGI:1342287 | ||||||||
EntrezGene | GeneID:16600 (SSTAR profile) | ||||||||
UniProt ID | KLF4_MOUSE | ||||||||
UniProt AC | Q60793 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Klf4 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 28.0 | 6.0 | 43.0 | 20.0 | 33.0 | 14.0 | 33.0 | 25.0 | 33.0 | 34.0 | 119.0 | 29.0 | 17.0 | 18.0 | 34.0 | 13.0 |
02 | 30.0 | 18.0 | 45.0 | 18.0 | 17.0 | 14.0 | 33.0 | 8.0 | 41.0 | 50.0 | 113.0 | 25.0 | 21.0 | 13.0 | 40.0 | 13.0 |
03 | 30.0 | 11.0 | 56.0 | 12.0 | 24.0 | 14.0 | 34.0 | 23.0 | 41.0 | 42.0 | 123.0 | 25.0 | 15.0 | 2.0 | 37.0 | 10.0 |
04 | 33.0 | 27.0 | 37.0 | 13.0 | 19.0 | 20.0 | 23.0 | 7.0 | 47.0 | 88.0 | 86.0 | 29.0 | 11.0 | 21.0 | 33.0 | 5.0 |
05 | 39.0 | 2.0 | 32.0 | 37.0 | 60.0 | 7.0 | 19.0 | 70.0 | 53.0 | 14.0 | 77.0 | 35.0 | 14.0 | 2.0 | 24.0 | 14.0 |
06 | 5.0 | 1.0 | 159.0 | 1.0 | 0.0 | 0.0 | 25.0 | 0.0 | 5.0 | 1.0 | 146.0 | 0.0 | 4.0 | 0.0 | 152.0 | 0.0 |
07 | 0.0 | 0.0 | 14.0 | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 | 5.0 | 0.0 | 473.0 | 4.0 | 0.0 | 0.0 | 1.0 | 0.0 |
08 | 1.0 | 2.0 | 2.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 7.0 | 5.0 | 477.0 | 1.0 | 0.0 | 0.0 | 4.0 | 0.0 |
09 | 4.0 | 1.0 | 1.0 | 2.0 | 1.0 | 2.0 | 0.0 | 4.0 | 66.0 | 161.0 | 1.0 | 255.0 | 0.0 | 1.0 | 0.0 | 0.0 |
10 | 1.0 | 0.0 | 69.0 | 1.0 | 2.0 | 2.0 | 159.0 | 2.0 | 0.0 | 1.0 | 1.0 | 0.0 | 0.0 | 2.0 | 252.0 | 7.0 |
11 | 0.0 | 0.0 | 3.0 | 0.0 | 0.0 | 0.0 | 2.0 | 3.0 | 9.0 | 6.0 | 326.0 | 140.0 | 1.0 | 0.0 | 6.0 | 3.0 |
12 | 0.0 | 1.0 | 9.0 | 0.0 | 0.0 | 0.0 | 6.0 | 0.0 | 12.0 | 7.0 | 312.0 | 6.0 | 3.0 | 3.0 | 139.0 | 1.0 |
13 | 0.0 | 0.0 | 14.0 | 1.0 | 0.0 | 1.0 | 9.0 | 1.0 | 16.0 | 2.0 | 427.0 | 21.0 | 1.0 | 0.0 | 6.0 | 0.0 |
14 | 0.0 | 8.0 | 4.0 | 5.0 | 0.0 | 3.0 | 0.0 | 0.0 | 44.0 | 246.0 | 42.0 | 124.0 | 2.0 | 18.0 | 1.0 | 2.0 |
15 | 7.0 | 11.0 | 18.0 | 10.0 | 43.0 | 95.0 | 74.0 | 63.0 | 17.0 | 14.0 | 8.0 | 8.0 | 9.0 | 40.0 | 62.0 | 20.0 |
16 | 13.0 | 11.0 | 44.0 | 8.0 | 18.0 | 48.0 | 56.0 | 38.0 | 24.0 | 12.0 | 113.0 | 13.0 | 18.0 | 13.0 | 54.0 | 16.0 |
17 | 12.0 | 16.0 | 35.0 | 10.0 | 22.0 | 30.0 | 13.0 | 19.0 | 34.0 | 66.0 | 152.0 | 15.0 | 4.0 | 16.0 | 34.0 | 21.0 |
18 | 7.0 | 6.0 | 50.0 | 9.0 | 28.0 | 30.0 | 43.0 | 27.0 | 22.0 | 33.0 | 157.0 | 22.0 | 7.0 | 4.0 | 42.0 | 12.0 |
19 | 9.0 | 19.0 | 27.0 | 9.0 | 18.0 | 21.0 | 21.0 | 13.0 | 60.0 | 75.0 | 123.0 | 34.0 | 12.0 | 11.0 | 28.0 | 19.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -0.106 | -1.598 | 0.318 | -0.437 | 0.056 | -0.786 | 0.056 | -0.218 | 0.056 | 0.085 | 1.33 | -0.072 | -0.597 | -0.541 | 0.085 | -0.858 |
02 | -0.038 | -0.541 | 0.363 | -0.541 | -0.597 | -0.786 | 0.056 | -1.326 | 0.271 | 0.467 | 1.278 | -0.218 | -0.39 | -0.858 | 0.246 | -0.858 |
03 | -0.038 | -1.02 | 0.58 | -0.936 | -0.258 | -0.786 | 0.085 | -0.3 | 0.271 | 0.294 | 1.363 | -0.218 | -0.719 | -2.582 | 0.169 | -1.112 |
04 | 0.056 | -0.142 | 0.169 | -0.858 | -0.488 | -0.437 | -0.3 | -1.452 | 0.406 | 1.029 | 1.006 | -0.072 | -1.02 | -0.39 | 0.056 | -1.768 |
05 | 0.221 | -2.582 | 0.025 | 0.169 | 0.648 | -1.452 | -0.488 | 0.802 | 0.525 | -0.786 | 0.896 | 0.114 | -0.786 | -2.582 | -0.258 | -0.786 |
06 | -1.768 | -3.124 | 1.619 | -3.124 | -4.398 | -4.398 | -0.218 | -4.398 | -1.768 | -3.124 | 1.534 | -4.398 | -1.973 | -4.398 | 1.574 | -4.398 |
07 | -4.398 | -4.398 | -0.786 | -4.398 | -4.398 | -4.398 | -2.582 | -4.398 | -1.768 | -4.398 | 2.708 | -1.973 | -4.398 | -4.398 | -3.124 | -4.398 |
08 | -3.124 | -2.582 | -2.582 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -1.452 | -1.768 | 2.716 | -3.124 | -4.398 | -4.398 | -1.973 | -4.398 |
09 | -1.973 | -3.124 | -3.124 | -2.582 | -3.124 | -2.582 | -4.398 | -1.973 | 0.743 | 1.631 | -3.124 | 2.09 | -4.398 | -3.124 | -4.398 | -4.398 |
10 | -3.124 | -4.398 | 0.787 | -3.124 | -2.582 | -2.582 | 1.619 | -2.582 | -4.398 | -3.124 | -3.124 | -4.398 | -4.398 | -2.582 | 2.079 | -1.452 |
11 | -4.398 | -4.398 | -2.232 | -4.398 | -4.398 | -4.398 | -2.582 | -2.232 | -1.213 | -1.598 | 2.336 | 1.492 | -3.124 | -4.398 | -1.598 | -2.232 |
12 | -4.398 | -3.124 | -1.213 | -4.398 | -4.398 | -4.398 | -1.598 | -4.398 | -0.936 | -1.452 | 2.292 | -1.598 | -2.232 | -2.232 | 1.485 | -3.124 |
13 | -4.398 | -4.398 | -0.786 | -3.124 | -4.398 | -3.124 | -1.213 | -3.124 | -0.656 | -2.582 | 2.605 | -0.39 | -3.124 | -4.398 | -1.598 | -4.398 |
14 | -4.398 | -1.326 | -1.973 | -1.768 | -4.398 | -2.232 | -4.398 | -4.398 | 0.341 | 2.055 | 0.294 | 1.371 | -2.582 | -0.541 | -3.124 | -2.582 |
15 | -1.452 | -1.02 | -0.541 | -1.112 | 0.318 | 1.106 | 0.857 | 0.697 | -0.597 | -0.786 | -1.326 | -1.326 | -1.213 | 0.246 | 0.681 | -0.437 |
16 | -0.858 | -1.02 | 0.341 | -1.326 | -0.541 | 0.427 | 0.58 | 0.195 | -0.258 | -0.936 | 1.278 | -0.858 | -0.541 | -0.858 | 0.544 | -0.656 |
17 | -0.936 | -0.656 | 0.114 | -1.112 | -0.344 | -0.038 | -0.858 | -0.488 | 0.085 | 0.743 | 1.574 | -0.719 | -1.973 | -0.656 | 0.085 | -0.39 |
18 | -1.452 | -1.598 | 0.467 | -1.213 | -0.106 | -0.038 | 0.318 | -0.142 | -0.344 | 0.056 | 1.606 | -0.344 | -1.452 | -1.973 | 0.294 | -0.936 |
19 | -1.213 | -0.488 | -0.142 | -1.213 | -0.541 | -0.39 | -0.39 | -0.858 | 0.648 | 0.87 | 1.363 | 0.085 | -0.936 | -1.02 | -0.106 | -0.488 |