Model info
| Transcription factor | LBX2 (GeneCards) | ||||||||
| Model | LBX2_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vYTAATTRGnb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 1425 | ||||||||
| TF family | NK-related factors {3.1.2} | ||||||||
| TF subfamily | LBX {3.1.2.10} | ||||||||
| HGNC | HGNC:15525 | ||||||||
| EntrezGene | GeneID:85474 (SSTAR profile) | ||||||||
| UniProt ID | LBX2_HUMAN | ||||||||
| UniProt AC | Q6XYB7 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | LBX2 expression | ||||||||
| ReMap ChIP-seq dataset list | LBX2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 364.0 | 245.0 | 648.0 | 155.0 |
| 02 | 80.75 | 514.75 | 72.75 | 743.75 |
| 03 | 2.0 | 1.0 | 14.0 | 1395.0 |
| 04 | 1409.25 | 2.25 | 0.25 | 0.25 |
| 05 | 1408.0 | 0.0 | 2.0 | 2.0 |
| 06 | 0.0 | 11.0 | 3.0 | 1398.0 |
| 07 | 32.0 | 6.0 | 52.0 | 1322.0 |
| 08 | 781.75 | 29.75 | 583.75 | 16.75 |
| 09 | 63.25 | 72.25 | 1230.25 | 46.25 |
| 10 | 186.75 | 320.75 | 489.75 | 414.75 |
| 11 | 142.25 | 476.25 | 211.25 | 582.25 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.031 | -0.363 | 0.605 | -0.817 |
| 02 | -1.458 | 0.376 | -1.56 | 0.743 |
| 03 | -4.533 | -4.837 | -3.111 | 1.37 |
| 04 | 1.381 | -4.47 | -5.147 | -5.147 |
| 05 | 1.38 | -5.277 | -4.533 | -4.533 |
| 06 | -5.277 | -3.321 | -4.3 | 1.373 |
| 07 | -2.351 | -3.816 | -1.886 | 1.317 |
| 08 | 0.792 | -2.42 | 0.501 | -2.95 |
| 09 | -1.696 | -1.567 | 1.245 | -1.999 |
| 10 | -0.632 | -0.095 | 0.326 | 0.16 |
| 11 | -0.901 | 0.298 | -0.51 | 0.498 |