Model info
| Transcription factor | LHX2 (GeneCards) | ||||||||
| Model | LHX2_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bbYTAATTRvhb | ||||||||
| Best auROC (human) | 0.826 | ||||||||
| Best auROC (mouse) | 0.931 | ||||||||
| Peak sets in benchmark (human) | 5 | ||||||||
| Peak sets in benchmark (mouse) | 12 | ||||||||
| Aligned words | 430 | ||||||||
| TF family | HD-LIM factors {3.1.5} | ||||||||
| TF subfamily | Lhx-2-like factors {3.1.5.3} | ||||||||
| HGNC | HGNC:6594 | ||||||||
| EntrezGene | GeneID:9355 (SSTAR profile) | ||||||||
| UniProt ID | LHX2_HUMAN | ||||||||
| UniProt AC | P50458 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | LHX2 expression | ||||||||
| ReMap ChIP-seq dataset list | LHX2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 57.0 | 76.0 | 102.0 | 195.0 |
| 02 | 40.0 | 113.0 | 137.0 | 140.0 |
| 03 | 48.0 | 186.0 | 7.0 | 189.0 |
| 04 | 12.0 | 5.0 | 0.0 | 413.0 |
| 05 | 333.0 | 76.0 | 17.0 | 4.0 |
| 06 | 412.0 | 12.0 | 1.0 | 5.0 |
| 07 | 0.0 | 9.0 | 9.0 | 412.0 |
| 08 | 4.0 | 6.0 | 102.0 | 318.0 |
| 09 | 249.0 | 3.0 | 152.0 | 26.0 |
| 10 | 74.0 | 97.0 | 212.0 | 47.0 |
| 11 | 76.0 | 104.0 | 54.0 | 196.0 |
| 12 | 38.0 | 92.0 | 104.0 | 196.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.622 | -0.341 | -0.052 | 0.589 |
| 02 | -0.965 | 0.049 | 0.239 | 0.261 |
| 03 | -0.789 | 0.542 | -2.55 | 0.558 |
| 04 | -2.088 | -2.817 | -4.275 | 1.336 |
| 05 | 1.121 | -0.341 | -1.773 | -2.984 |
| 06 | 1.333 | -2.088 | -3.769 | -2.817 |
| 07 | -4.275 | -2.339 | -2.339 | 1.333 |
| 08 | -2.984 | -2.674 | -0.052 | 1.075 |
| 09 | 0.832 | -3.184 | 0.342 | -1.377 |
| 10 | -0.367 | -0.101 | 0.672 | -0.81 |
| 11 | -0.341 | -0.033 | -0.675 | 0.594 |
| 12 | -1.015 | -0.153 | -0.033 | 0.594 |