Model info
| Transcription factor | Lhx3 | ||||||||
| Model | LHX3_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nbTAATKRv | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.94 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 2 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | HD-LIM factors {3.1.5} | ||||||||
| TF subfamily | Lhx-3-like factors {3.1.5.4} | ||||||||
| MGI | MGI:102673 | ||||||||
| EntrezGene | GeneID:16871 (SSTAR profile) | ||||||||
| UniProt ID | LHX3_MOUSE | ||||||||
| UniProt AC | P50481 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Lhx3 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 113.0 | 117.0 | 162.0 | 106.0 |
| 02 | 34.0 | 275.0 | 65.0 | 124.0 |
| 03 | 121.0 | 3.0 | 3.0 | 371.0 |
| 04 | 315.0 | 1.0 | 180.0 | 2.0 |
| 05 | 448.0 | 33.0 | 10.0 | 7.0 |
| 06 | 10.0 | 1.0 | 55.0 | 432.0 |
| 07 | 6.0 | 0.0 | 215.0 | 277.0 |
| 08 | 242.0 | 22.0 | 224.0 | 10.0 |
| 09 | 221.0 | 150.0 | 117.0 | 10.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.096 | -0.061 | 0.26 | -0.159 |
| 02 | -1.266 | 0.786 | -0.639 | -0.004 |
| 03 | -0.028 | -3.321 | -3.321 | 1.084 |
| 04 | 0.921 | -3.9 | 0.365 | -3.569 |
| 05 | 1.272 | -1.294 | -2.39 | -2.69 |
| 06 | -2.39 | -3.9 | -0.802 | 1.235 |
| 07 | -2.815 | -4.397 | 0.541 | 0.793 |
| 08 | 0.659 | -1.677 | 0.582 | -2.39 |
| 09 | 0.568 | 0.184 | -0.061 | -2.39 |