Model info
| Transcription factor | Lhx6 | ||||||||
| Model | LHX6_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nYTGATTRv | ||||||||
| Best auROC (human) | 0.517 | ||||||||
| Best auROC (mouse) | 0.946 | ||||||||
| Peak sets in benchmark (human) | 1 | ||||||||
| Peak sets in benchmark (mouse) | 2 | ||||||||
| Aligned words | 241 | ||||||||
| TF family | HD-LIM factors {3.1.5} | ||||||||
| TF subfamily | Lhx-6-like factors {3.1.5.5} | ||||||||
| MGI | MGI:1306803 | ||||||||
| EntrezGene | GeneID:16874 (SSTAR profile) | ||||||||
| UniProt ID | LHX6_MOUSE | ||||||||
| UniProt AC | Q9R1R0 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Lhx6 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 48.0 | 67.0 | 86.0 | 40.0 |
| 02 | 18.0 | 144.0 | 16.0 | 63.0 |
| 03 | 2.0 | 1.0 | 0.0 | 238.0 |
| 04 | 22.0 | 11.0 | 206.0 | 2.0 |
| 05 | 239.0 | 0.0 | 1.0 | 1.0 |
| 06 | 6.0 | 1.0 | 0.0 | 234.0 |
| 07 | 0.0 | 0.0 | 7.0 | 234.0 |
| 08 | 135.0 | 0.0 | 98.0 | 8.0 |
| 09 | 51.0 | 102.0 | 82.0 | 6.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.222 | 0.104 | 0.349 | -0.398 |
| 02 | -1.157 | 0.858 | -1.266 | 0.044 |
| 03 | -2.906 | -3.258 | -3.805 | 1.357 |
| 04 | -0.97 | -1.606 | 1.214 | -2.906 |
| 05 | 1.361 | -3.805 | -3.258 | -3.258 |
| 06 | -2.123 | -3.258 | -3.805 | 1.34 |
| 07 | -3.805 | -3.805 | -1.996 | 1.34 |
| 08 | 0.794 | -3.805 | 0.478 | -1.883 |
| 09 | -0.163 | 0.517 | 0.302 | -2.123 |