Model info
| Transcription factor | LHX8 (GeneCards) | ||||||||
| Model | LHX8_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 18 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hvYTAATTRShvhYWWdd | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 9063 | ||||||||
| TF family | HD-LIM factors {3.1.5} | ||||||||
| TF subfamily | Lhx-6-like factors {3.1.5.5} | ||||||||
| HGNC | HGNC:28838 | ||||||||
| EntrezGene | GeneID:431707 (SSTAR profile) | ||||||||
| UniProt ID | LHX8_HUMAN | ||||||||
| UniProt AC | Q68G74 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | LHX8 expression | ||||||||
| ReMap ChIP-seq dataset list | LHX8 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1694.0 | 3637.0 | 1623.0 | 2089.0 |
| 02 | 2779.25 | 1838.25 | 3942.25 | 483.25 |
| 03 | 248.5 | 4798.5 | 638.5 | 3357.5 |
| 04 | 5.0 | 9.0 | 4.0 | 9025.0 |
| 05 | 5380.0 | 4.0 | 3659.0 | 0.0 |
| 06 | 9036.0 | 3.0 | 4.0 | 0.0 |
| 07 | 1.0 | 1.0 | 0.0 | 9041.0 |
| 08 | 1.0 | 30.0 | 34.0 | 8978.0 |
| 09 | 4614.0 | 1.0 | 4424.0 | 4.0 |
| 10 | 496.25 | 5665.25 | 2688.25 | 193.25 |
| 11 | 3713.75 | 2327.75 | 1319.75 | 1681.75 |
| 12 | 4820.75 | 1754.75 | 1313.75 | 1153.75 |
| 13 | 1979.5 | 1373.5 | 587.5 | 5102.5 |
| 14 | 1202.5 | 1741.5 | 469.5 | 5629.5 |
| 15 | 5450.75 | 652.75 | 1076.75 | 1862.75 |
| 16 | 5539.75 | 550.75 | 976.75 | 1975.75 |
| 17 | 2148.25 | 871.25 | 1124.25 | 4899.25 |
| 18 | 2045.0 | 1136.0 | 1450.0 | 4412.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.288 | 0.475 | -0.331 | -0.079 |
| 02 | 0.206 | -0.207 | 0.556 | -1.539 |
| 03 | -2.2 | 0.752 | -1.262 | 0.395 |
| 04 | -5.74 | -5.302 | -5.887 | 1.384 |
| 05 | 0.866 | -5.887 | 0.481 | -6.901 |
| 06 | 1.385 | -6.061 | -5.887 | -6.901 |
| 07 | -6.537 | -6.537 | -6.901 | 1.385 |
| 08 | -6.537 | -4.25 | -4.133 | 1.378 |
| 09 | 0.713 | -6.537 | 0.671 | -5.887 |
| 10 | -1.513 | 0.918 | 0.173 | -2.449 |
| 11 | 0.496 | 0.029 | -0.538 | -0.296 |
| 12 | 0.757 | -0.253 | -0.542 | -0.672 |
| 13 | -0.133 | -0.498 | -1.345 | 0.813 |
| 14 | -0.63 | -0.261 | -1.568 | 0.912 |
| 15 | 0.879 | -1.24 | -0.741 | -0.193 |
| 16 | 0.896 | -1.409 | -0.838 | -0.135 |
| 17 | -0.051 | -0.952 | -0.698 | 0.773 |
| 18 | -0.1 | -0.687 | -0.444 | 0.668 |