Model info
| Transcription factor | Mecp2 | ||||||||
| Model | MECP2_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 7 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | SCCGGAG | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 122 | ||||||||
| TF family | |||||||||
| TF subfamily | |||||||||
| MGI | MGI:99918 | ||||||||
| EntrezGene | GeneID:17257 (SSTAR profile) | ||||||||
| UniProt ID | MECP2_MOUSE | ||||||||
| UniProt AC | Q9Z2D6 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Mecp2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2.966 | 70.176 | 42.496 | 2.966 |
| 02 | 0.0 | 118.604 | 0.0 | 0.0 |
| 03 | 0.0 | 118.604 | 0.0 | 0.0 |
| 04 | 0.0 | 0.0 | 118.604 | 0.0 |
| 05 | 0.0 | 0.0 | 118.604 | 0.0 |
| 06 | 68.206 | 0.0 | 50.399 | 0.0 |
| 07 | 52.388 | 0.0 | 66.216 | 0.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -2.004 | 0.839 | 0.348 | -2.004 |
| 02 | -3.252 | 1.357 | -3.252 | -3.252 |
| 03 | -3.252 | 1.357 | -3.252 | -3.252 |
| 04 | -3.252 | -3.252 | 1.357 | -3.252 |
| 05 | -3.252 | -3.252 | 1.357 | -3.252 |
| 06 | 0.811 | -3.252 | 0.514 | -3.252 |
| 07 | 0.552 | -3.252 | 0.782 | -3.252 |