Transcription factor | Mitf | ||||||||
Model | MITF_MOUSE.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 12 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nbChYGTGAShn | ||||||||
Best auROC (human) | 0.995 | ||||||||
Best auROC (mouse) | 0.839 | ||||||||
Peak sets in benchmark (human) | 28 | ||||||||
Peak sets in benchmark (mouse) | 3 | ||||||||
Aligned words | 507 | ||||||||
TF family | bHLH-ZIP factors {1.2.6} | ||||||||
TF subfamily | TFE3-like factors {1.2.6.1} | ||||||||
MGI | MGI:104554 | ||||||||
EntrezGene | GeneID:17342 (SSTAR profile) | ||||||||
UniProt ID | MITF_MOUSE | ||||||||
UniProt AC | Q08874 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Mitf expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 14.0 | 43.0 | 48.0 | 19.0 | 13.0 | 55.0 | 13.0 | 30.0 | 19.0 | 56.0 | 23.0 | 72.0 | 5.0 | 41.0 | 29.0 | 20.0 |
02 | 1.0 | 49.0 | 1.0 | 0.0 | 5.0 | 180.0 | 1.0 | 9.0 | 2.0 | 108.0 | 3.0 | 0.0 | 0.0 | 134.0 | 1.0 | 6.0 |
03 | 1.0 | 1.0 | 6.0 | 0.0 | 217.0 | 102.0 | 45.0 | 107.0 | 2.0 | 1.0 | 2.0 | 1.0 | 2.0 | 7.0 | 5.0 | 1.0 |
04 | 2.0 | 135.0 | 9.0 | 76.0 | 0.0 | 77.0 | 3.0 | 31.0 | 1.0 | 49.0 | 4.0 | 4.0 | 2.0 | 75.0 | 7.0 | 25.0 |
05 | 0.0 | 0.0 | 5.0 | 0.0 | 63.0 | 8.0 | 265.0 | 0.0 | 4.0 | 7.0 | 11.0 | 1.0 | 6.0 | 1.0 | 126.0 | 3.0 |
06 | 0.0 | 0.0 | 0.0 | 73.0 | 0.0 | 0.0 | 0.0 | 16.0 | 2.0 | 0.0 | 2.0 | 403.0 | 0.0 | 0.0 | 0.0 | 4.0 |
07 | 0.0 | 0.0 | 2.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 | 0.0 | 1.0 | 495.0 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 437.0 | 22.0 | 18.0 | 22.0 | 0.0 | 0.0 | 0.0 | 0.0 |
09 | 11.0 | 289.0 | 70.0 | 68.0 | 1.0 | 7.0 | 7.0 | 7.0 | 0.0 | 13.0 | 0.0 | 5.0 | 1.0 | 11.0 | 7.0 | 3.0 |
10 | 5.0 | 4.0 | 0.0 | 4.0 | 28.0 | 134.0 | 20.0 | 138.0 | 10.0 | 45.0 | 7.0 | 22.0 | 12.0 | 31.0 | 13.0 | 27.0 |
11 | 6.0 | 11.0 | 29.0 | 9.0 | 39.0 | 68.0 | 47.0 | 60.0 | 3.0 | 11.0 | 20.0 | 6.0 | 25.0 | 72.0 | 54.0 | 40.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -0.788 | 0.316 | 0.425 | -0.49 | -0.86 | 0.56 | -0.86 | -0.04 | -0.49 | 0.578 | -0.302 | 0.828 | -1.77 | 0.269 | -0.074 | -0.439 |
02 | -3.126 | 0.445 | -3.126 | -4.4 | -1.77 | 1.741 | -3.126 | -1.215 | -2.584 | 1.231 | -2.234 | -4.4 | -4.4 | 1.446 | -3.126 | -1.6 |
03 | -3.126 | -3.126 | -1.6 | -4.4 | 1.927 | 1.174 | 0.361 | 1.222 | -2.584 | -3.126 | -2.584 | -3.126 | -2.584 | -1.454 | -1.77 | -3.126 |
04 | -2.584 | 1.454 | -1.215 | 0.881 | -4.4 | 0.894 | -2.234 | -0.008 | -3.126 | 0.445 | -1.975 | -1.975 | -2.584 | 0.868 | -1.454 | -0.22 |
05 | -4.4 | -4.4 | -1.77 | -4.4 | 0.695 | -1.328 | 2.127 | -4.4 | -1.975 | -1.454 | -1.022 | -3.126 | -1.6 | -3.126 | 1.385 | -2.234 |
06 | -4.4 | -4.4 | -4.4 | 0.841 | -4.4 | -4.4 | -4.4 | -0.658 | -2.584 | -4.4 | -2.584 | 2.546 | -4.4 | -4.4 | -4.4 | -1.975 |
07 | -4.4 | -4.4 | -2.584 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -2.584 | -4.4 | -4.4 | -3.126 | 2.751 | -4.4 |
08 | -4.4 | -4.4 | -4.4 | -4.4 | -3.126 | -4.4 | -4.4 | -4.4 | 2.626 | -0.346 | -0.543 | -0.346 | -4.4 | -4.4 | -4.4 | -4.4 |
09 | -1.022 | 2.213 | 0.8 | 0.771 | -3.126 | -1.454 | -1.454 | -1.454 | -4.4 | -0.86 | -4.4 | -1.77 | -3.126 | -1.022 | -1.454 | -2.234 |
10 | -1.77 | -1.975 | -4.4 | -1.975 | -0.108 | 1.446 | -0.439 | 1.476 | -1.114 | 0.361 | -1.454 | -0.346 | -0.938 | -0.008 | -0.86 | -0.144 |
11 | -1.6 | -1.022 | -0.074 | -1.215 | 0.219 | 0.771 | 0.404 | 0.646 | -2.234 | -1.022 | -0.439 | -1.6 | -0.22 | 0.828 | 0.542 | 0.244 |