Model info
| Transcription factor | Mitf | ||||||||
| Model | MITF_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bChYGTGMYh | ||||||||
| Best auROC (human) | 0.996 | ||||||||
| Best auROC (mouse) | 0.835 | ||||||||
| Peak sets in benchmark (human) | 28 | ||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | bHLH-ZIP factors {1.2.6} | ||||||||
| TF subfamily | TFE3-like factors {1.2.6.1} | ||||||||
| MGI | MGI:104554 | ||||||||
| EntrezGene | GeneID:17342 (SSTAR profile) | ||||||||
| UniProt ID | MITF_MOUSE | ||||||||
| UniProt AC | Q08874 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Mitf expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 45.0 | 198.0 | 88.0 | 169.0 |
| 02 | 2.0 | 486.0 | 6.0 | 6.0 |
| 03 | 228.0 | 107.0 | 30.0 | 135.0 |
| 04 | 4.0 | 311.0 | 23.0 | 162.0 |
| 05 | 59.0 | 36.0 | 400.0 | 5.0 |
| 06 | 8.0 | 1.0 | 11.0 | 480.0 |
| 07 | 0.0 | 6.0 | 490.0 | 4.0 |
| 08 | 387.0 | 58.0 | 29.0 | 26.0 |
| 09 | 6.0 | 365.0 | 48.0 | 81.0 |
| 10 | 40.0 | 195.0 | 34.0 | 231.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.0 | 0.455 | -0.346 | 0.298 |
| 02 | -3.573 | 1.349 | -2.819 | -2.819 |
| 03 | 0.595 | -0.153 | -1.389 | 0.076 |
| 04 | -3.126 | 0.904 | -1.64 | 0.256 |
| 05 | -0.737 | -1.215 | 1.155 | -2.961 |
| 06 | -2.584 | -3.903 | -2.311 | 1.336 |
| 07 | -4.4 | -2.819 | 1.357 | -3.126 |
| 08 | 1.122 | -0.754 | -1.421 | -1.525 |
| 09 | -2.819 | 1.063 | -0.938 | -0.427 |
| 10 | -1.114 | 0.44 | -1.27 | 0.608 |