Transcription factor | Msgn1 | ||||||||
Model | MSGN1_MOUSE.H11DI.0.C | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 14 | ||||||||
Quality | C | ||||||||
Motif rank | 0 | ||||||||
Consensus | nvCCATTTGKYhhn | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | 0.999 | ||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | 4 | ||||||||
Aligned words | 500 | ||||||||
TF family | Tal-related factors {1.2.3} | ||||||||
TF subfamily | Mesp-like factors {1.2.3.3} | ||||||||
MGI | MGI:1860483 | ||||||||
EntrezGene | GeneID:56184 (SSTAR profile) | ||||||||
UniProt ID | MSGN1_MOUSE | ||||||||
UniProt AC | Q9JK54 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Msgn1 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 38.0 | 7.0 | 94.0 | 7.0 | 88.0 | 11.0 | 18.0 | 14.0 | 57.0 | 14.0 | 53.0 | 6.0 | 25.0 | 15.0 | 46.0 | 7.0 |
02 | 6.0 | 195.0 | 7.0 | 0.0 | 5.0 | 42.0 | 0.0 | 0.0 | 4.0 | 205.0 | 2.0 | 0.0 | 0.0 | 32.0 | 2.0 | 0.0 |
03 | 0.0 | 15.0 | 0.0 | 0.0 | 1.0 | 473.0 | 0.0 | 0.0 | 0.0 | 11.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
04 | 1.0 | 0.0 | 0.0 | 0.0 | 453.0 | 7.0 | 5.0 | 34.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
05 | 0.0 | 4.0 | 3.0 | 447.0 | 0.0 | 0.0 | 0.0 | 7.0 | 0.0 | 0.0 | 0.0 | 5.0 | 0.0 | 0.0 | 1.0 | 33.0 |
06 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 3.0 | 0.0 | 4.0 | 0.0 | 0.0 | 32.0 | 73.0 | 0.0 | 387.0 |
07 | 0.0 | 0.0 | 0.0 | 32.0 | 0.0 | 0.0 | 0.0 | 78.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 390.0 |
08 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 499.0 | 1.0 |
09 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 2.0 | 79.0 | 172.0 | 246.0 | 0.0 | 0.0 | 1.0 | 0.0 |
10 | 0.0 | 1.0 | 1.0 | 0.0 | 0.0 | 34.0 | 0.0 | 45.0 | 3.0 | 83.0 | 1.0 | 86.0 | 0.0 | 130.0 | 7.0 | 109.0 |
11 | 1.0 | 2.0 | 0.0 | 0.0 | 54.0 | 120.0 | 10.0 | 64.0 | 0.0 | 6.0 | 1.0 | 2.0 | 17.0 | 119.0 | 56.0 | 48.0 |
12 | 9.0 | 25.0 | 25.0 | 13.0 | 59.0 | 98.0 | 5.0 | 85.0 | 6.0 | 20.0 | 14.0 | 27.0 | 14.0 | 57.0 | 18.0 | 25.0 |
13 | 17.0 | 20.0 | 31.0 | 20.0 | 44.0 | 57.0 | 4.0 | 95.0 | 14.0 | 22.0 | 19.0 | 7.0 | 7.0 | 61.0 | 51.0 | 31.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 0.193 | -1.454 | 1.093 | -1.454 | 1.027 | -1.022 | -0.543 | -0.788 | 0.595 | -0.788 | 0.523 | -1.6 | -0.22 | -0.721 | 0.383 | -1.454 |
02 | -1.6 | 1.821 | -1.454 | -4.4 | -1.77 | 0.293 | -4.4 | -4.4 | -1.975 | 1.871 | -2.584 | -4.4 | -4.4 | 0.023 | -2.584 | -4.4 |
03 | -4.4 | -0.721 | -4.4 | -4.4 | -3.126 | 2.706 | -4.4 | -4.4 | -4.4 | -1.022 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 |
04 | -3.126 | -4.4 | -4.4 | -4.4 | 2.662 | -1.454 | -1.77 | 0.083 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 |
05 | -4.4 | -1.975 | -2.234 | 2.649 | -4.4 | -4.4 | -4.4 | -1.454 | -4.4 | -4.4 | -4.4 | -1.77 | -4.4 | -4.4 | -3.126 | 0.054 |
06 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -3.126 | -4.4 | -2.234 | -4.4 | -1.975 | -4.4 | -4.4 | 0.023 | 0.841 | -4.4 | 2.505 |
07 | -4.4 | -4.4 | -4.4 | 0.023 | -4.4 | -4.4 | -4.4 | 0.907 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | 2.513 |
08 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | 2.759 | -3.126 |
09 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -2.584 | 0.92 | 1.695 | 2.053 | -4.4 | -4.4 | -3.126 | -4.4 |
10 | -4.4 | -3.126 | -3.126 | -4.4 | -4.4 | 0.083 | -4.4 | 0.361 | -2.234 | 0.969 | -3.126 | 1.004 | -4.4 | 1.416 | -1.454 | 1.241 |
11 | -3.126 | -2.584 | -4.4 | -4.4 | 0.542 | 1.336 | -1.114 | 0.711 | -4.4 | -1.6 | -3.126 | -2.584 | -0.599 | 1.328 | 0.578 | 0.425 |
12 | -1.215 | -0.22 | -0.22 | -0.86 | 0.63 | 1.135 | -1.77 | 0.993 | -1.6 | -0.439 | -0.788 | -0.144 | -0.788 | 0.595 | -0.543 | -0.22 |
13 | -0.599 | -0.439 | -0.008 | -0.439 | 0.339 | 0.595 | -1.975 | 1.104 | -0.788 | -0.346 | -0.49 | -1.454 | -1.454 | 0.663 | 0.485 | -0.008 |