Model info
| Transcription factor | Mycn | ||||||||
| Model | MYCN_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 8 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | SCRCGTGK | ||||||||
| Best auROC (human) | 0.897 | ||||||||
| Best auROC (mouse) | 0.928 | ||||||||
| Peak sets in benchmark (human) | 32 | ||||||||
| Peak sets in benchmark (mouse) | 10 | ||||||||
| Aligned words | 508 | ||||||||
| TF family | bHLH-ZIP factors {1.2.6} | ||||||||
| TF subfamily | Myc / Max factors {1.2.6.5} | ||||||||
| MGI | MGI:97357 | ||||||||
| EntrezGene | GeneID:18109 (SSTAR profile) | ||||||||
| UniProt ID | MYCN_MOUSE | ||||||||
| UniProt AC | P03966 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Mycn expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 6.0 | 243.0 | 168.0 | 83.0 |
| 02 | 40.0 | 443.0 | 10.0 | 7.0 |
| 03 | 297.0 | 6.0 | 139.0 | 58.0 |
| 04 | 1.0 | 490.0 | 5.0 | 4.0 |
| 05 | 69.0 | 11.0 | 412.0 | 8.0 |
| 06 | 1.0 | 0.0 | 1.0 | 498.0 |
| 07 | 1.0 | 1.0 | 496.0 | 2.0 |
| 08 | 21.0 | 62.0 | 323.0 | 94.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -2.819 | 0.659 | 0.293 | -0.403 |
| 02 | -1.114 | 1.256 | -2.394 | -2.694 |
| 03 | 0.858 | -2.819 | 0.105 | -0.754 |
| 04 | -3.903 | 1.357 | -2.961 | -3.126 |
| 05 | -0.584 | -2.311 | 1.184 | -2.584 |
| 06 | -3.903 | -4.4 | -3.903 | 1.373 |
| 07 | -3.903 | -3.903 | 1.369 | -3.573 |
| 08 | -1.725 | -0.689 | 0.942 | -0.281 |