Model info
| Transcription factor | MYOD1 (GeneCards) | ||||||||
| Model | MYOD1_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 15 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vCAGCTGYYnYbbbh | ||||||||
| Best auROC (human) | 0.99 | ||||||||
| Best auROC (mouse) | 0.992 | ||||||||
| Peak sets in benchmark (human) | 9 | ||||||||
| Peak sets in benchmark (mouse) | 63 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | MyoD / ASC-related factors {1.2.2} | ||||||||
| TF subfamily | Myogenic transcription factors {1.2.2.1} | ||||||||
| HGNC | HGNC:7611 | ||||||||
| EntrezGene | GeneID:4654 (SSTAR profile) | ||||||||
| UniProt ID | MYOD1_HUMAN | ||||||||
| UniProt AC | P15172 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | MYOD1 expression | ||||||||
| ReMap ChIP-seq dataset list | MYOD1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 110.0 | 119.0 | 204.0 | 67.0 |
| 02 | 3.0 | 496.0 | 1.0 | 0.0 |
| 03 | 497.0 | 0.0 | 0.0 | 3.0 |
| 04 | 4.0 | 114.0 | 375.0 | 7.0 |
| 05 | 5.0 | 490.0 | 0.0 | 5.0 |
| 06 | 1.0 | 2.0 | 0.0 | 497.0 |
| 07 | 0.0 | 2.0 | 497.0 | 1.0 |
| 08 | 0.0 | 196.0 | 19.0 | 285.0 |
| 09 | 6.0 | 210.0 | 30.0 | 254.0 |
| 10 | 83.0 | 167.0 | 146.0 | 104.0 |
| 11 | 33.0 | 287.0 | 54.0 | 126.0 |
| 12 | 72.0 | 117.0 | 85.0 | 226.0 |
| 13 | 65.0 | 80.0 | 248.0 | 107.0 |
| 14 | 24.0 | 198.0 | 111.0 | 167.0 |
| 15 | 77.0 | 257.0 | 66.0 | 100.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.126 | -0.049 | 0.485 | -0.613 |
| 02 | -3.325 | 1.369 | -3.903 | -4.4 |
| 03 | 1.371 | -4.4 | -4.4 | -3.325 |
| 04 | -3.126 | -0.091 | 1.09 | -2.694 |
| 05 | -2.961 | 1.357 | -4.4 | -2.961 |
| 06 | -3.903 | -3.573 | -4.4 | 1.371 |
| 07 | -4.4 | -3.573 | 1.371 | -3.903 |
| 08 | -4.4 | 0.445 | -1.818 | 0.817 |
| 09 | -2.819 | 0.514 | -1.389 | 0.703 |
| 10 | -0.403 | 0.287 | 0.154 | -0.181 |
| 11 | -1.298 | 0.824 | -0.823 | 0.008 |
| 12 | -0.543 | -0.065 | -0.38 | 0.587 |
| 13 | -0.643 | -0.439 | 0.679 | -0.153 |
| 14 | -1.6 | 0.455 | -0.117 | 0.287 |
| 15 | -0.477 | 0.714 | -0.628 | -0.22 |