Model info
| Transcription factor | MYOD1 (GeneCards) | ||||||||
| Model | MYOD1_HUMAN.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | bnbCAGCTGTY | ||||||||
| Best auROC (human) | 0.984 | ||||||||
| Best auROC (mouse) | 0.988 | ||||||||
| Peak sets in benchmark (human) | 9 | ||||||||
| Peak sets in benchmark (mouse) | 63 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | MyoD / ASC-related factors {1.2.2} | ||||||||
| TF subfamily | Myogenic transcription factors {1.2.2.1} | ||||||||
| HGNC | HGNC:7611 | ||||||||
| EntrezGene | GeneID:4654 (SSTAR profile) | ||||||||
| UniProt ID | MYOD1_HUMAN | ||||||||
| UniProt AC | P15172 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | MYOD1 expression | ||||||||
| ReMap ChIP-seq dataset list | MYOD1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 46.0 | 254.0 | 96.0 | 104.0 |
| 02 | 137.0 | 116.0 | 75.0 | 172.0 |
| 03 | 44.0 | 105.0 | 293.0 | 58.0 |
| 04 | 1.0 | 491.0 | 6.0 | 2.0 |
| 05 | 488.0 | 3.0 | 1.0 | 8.0 |
| 06 | 4.0 | 68.0 | 415.0 | 13.0 |
| 07 | 4.0 | 492.0 | 3.0 | 1.0 |
| 08 | 0.0 | 0.0 | 0.0 | 500.0 |
| 09 | 0.0 | 5.0 | 494.0 | 1.0 |
| 10 | 1.0 | 141.0 | 6.0 | 352.0 |
| 11 | 0.0 | 248.0 | 42.0 | 210.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.979 | 0.703 | -0.26 | -0.181 |
| 02 | 0.091 | -0.074 | -0.503 | 0.316 |
| 03 | -1.022 | -0.172 | 0.845 | -0.754 |
| 04 | -3.903 | 1.359 | -2.819 | -3.573 |
| 05 | 1.353 | -3.325 | -3.903 | -2.584 |
| 06 | -3.126 | -0.599 | 1.191 | -2.163 |
| 07 | -3.126 | 1.361 | -3.325 | -3.903 |
| 08 | -4.4 | -4.4 | -4.4 | 1.377 |
| 09 | -4.4 | -2.961 | 1.365 | -3.903 |
| 10 | -3.903 | 0.119 | -2.819 | 1.027 |
| 11 | -4.4 | 0.679 | -1.067 | 0.514 |