Model info
| Transcription factor | Neurod1 | ||||||||
| Model | NDF1_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RRCAGMTGGb | ||||||||
| Best auROC (human) | 0.946 | ||||||||
| Best auROC (mouse) | 0.952 | ||||||||
| Peak sets in benchmark (human) | 5 | ||||||||
| Peak sets in benchmark (mouse) | 2 | ||||||||
| Aligned words | 503 | ||||||||
| TF family | Tal-related factors {1.2.3} | ||||||||
| TF subfamily | Neurogenin / Atonal-like factors {1.2.3.4} | ||||||||
| MGI | MGI:1339708 | ||||||||
| EntrezGene | GeneID:18012 (SSTAR profile) | ||||||||
| UniProt ID | NDF1_MOUSE | ||||||||
| UniProt AC | Q60867 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Neurod1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 217.0 | 36.0 | 235.0 | 12.0 |
| 02 | 262.0 | 104.0 | 133.0 | 1.0 |
| 03 | 11.0 | 488.0 | 1.0 | 0.0 |
| 04 | 499.0 | 0.0 | 0.0 | 1.0 |
| 05 | 1.0 | 0.0 | 487.0 | 12.0 |
| 06 | 365.0 | 110.0 | 25.0 | 0.0 |
| 07 | 4.0 | 0.0 | 0.0 | 496.0 |
| 08 | 1.0 | 0.0 | 496.0 | 3.0 |
| 09 | 4.0 | 24.0 | 384.0 | 88.0 |
| 10 | 38.0 | 198.0 | 63.0 | 201.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.546 | -1.215 | 0.626 | -2.234 |
| 02 | 0.734 | -0.181 | 0.061 | -3.903 |
| 03 | -2.311 | 1.353 | -3.903 | -4.4 |
| 04 | 1.375 | -4.4 | -4.4 | -3.903 |
| 05 | -3.903 | -4.4 | 1.351 | -2.234 |
| 06 | 1.063 | -0.126 | -1.561 | -4.4 |
| 07 | -3.126 | -4.4 | -4.4 | 1.369 |
| 08 | -3.903 | -4.4 | 1.369 | -3.325 |
| 09 | -3.126 | -1.6 | 1.114 | -0.346 |
| 10 | -1.163 | 0.455 | -0.673 | 0.47 |