Model info
| Transcription factor | Nfia | ||||||||
| Model | NFIA_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 15 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hTGGShnGnhKCCWd | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 233 | ||||||||
| TF family | Nuclear factor 1 {7.1.2} | ||||||||
| TF subfamily | NF-1A (NF-IA) {7.1.2.0.1} | ||||||||
| MGI | MGI:108056 | ||||||||
| EntrezGene | GeneID:18027 (SSTAR profile) | ||||||||
| UniProt ID | NFIA_MOUSE | ||||||||
| UniProt AC | Q02780 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nfia expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 33.867 | 49.844 | 25.195 | 124.094 |
| 02 | 7.811 | 7.101 | 16.129 | 201.959 |
| 03 | 10.651 | 2.029 | 204.597 | 15.723 |
| 04 | 15.318 | 6.898 | 199.22 | 11.564 |
| 05 | 25.867 | 167.875 | 26.78 | 12.477 |
| 06 | 96.743 | 58.251 | 28.53 | 49.477 |
| 07 | 50.06 | 76.28 | 48.233 | 58.427 |
| 08 | 85.631 | 0.423 | 146.693 | 0.254 |
| 09 | 53.66 | 50.82 | 80.235 | 48.284 |
| 10 | 70.5 | 30.482 | 23.686 | 108.332 |
| 11 | 17.575 | 16.154 | 171.603 | 27.668 |
| 12 | 13.897 | 189.279 | 14.658 | 15.165 |
| 13 | 13.289 | 195.467 | 13.39 | 10.854 |
| 14 | 181.519 | 14.912 | 16.383 | 20.187 |
| 15 | 102.679 | 20.922 | 82.696 | 26.704 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.526 | -0.152 | -0.809 | 0.744 |
| 02 | -1.872 | -1.952 | -1.226 | 1.227 |
| 03 | -1.602 | -2.867 | 1.24 | -1.25 |
| 04 | -1.274 | -1.976 | 1.213 | -1.529 |
| 05 | -0.784 | 1.043 | -0.751 | -1.46 |
| 06 | 0.498 | 0.0 | -0.69 | -0.159 |
| 07 | -0.148 | 0.264 | -0.184 | 0.003 |
| 08 | 0.378 | -3.508 | 0.91 | -3.608 |
| 09 | -0.08 | -0.133 | 0.314 | -0.183 |
| 10 | 0.187 | -0.627 | -0.867 | 0.61 |
| 11 | -1.147 | -1.225 | 1.065 | -0.72 |
| 12 | -1.363 | 1.163 | -1.314 | -1.283 |
| 13 | -1.403 | 1.194 | -1.396 | -1.585 |
| 14 | 1.121 | -1.298 | -1.212 | -1.018 |
| 15 | 0.557 | -0.984 | 0.344 | -0.753 |