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Model info
Transcription factorNFIC
(GeneCards)
ModelNFIC_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
A
Motif rank
0
ConsensusnbYTGGChbnvdKYChdvn
Best auROC (human)0.97
Best auROC (mouse)0.701
Peak sets in benchmark (human)18
Peak sets in benchmark (mouse)1
Aligned words500
TF familyNuclear factor 1 {7.1.2}
TF subfamilyNF-1C (NF-IC) {7.1.2.0.3}
HGNCHGNC:7786
EntrezGeneGeneID:4782
(SSTAR profile)
UniProt IDNFIC_HUMAN
UniProt ACP08651
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.12951
0.0005 11.12241
0.0001 15.187460000000002
GTEx tissue expression atlas NFIC expression
ReMap ChIP-seq dataset list NFIC datasets
Motifs in JASPAR
MA0119.1 (NFIC::TLX1; Homo sapiens)
MA0161.1 (NFIC; Homo sapiens)
MA0161.2 (NFIC; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0110.039.031.024.019.048.09.041.012.039.025.044.05.075.044.035.0
020.025.01.020.01.093.01.0106.01.073.01.034.02.065.01.076.0
030.00.00.04.00.00.02.0254.00.00.00.04.00.00.09.0227.0
040.00.00.00.00.00.00.00.00.00.011.00.01.01.0486.01.0
050.00.01.00.00.00.01.00.02.03.0485.07.00.00.01.00.0
060.02.00.00.00.02.00.01.071.0397.04.016.00.06.00.01.0
0726.018.09.018.0141.097.016.0153.01.02.00.01.05.07.03.03.0
0817.047.067.042.018.047.017.042.04.015.05.04.011.074.052.038.0
098.016.019.07.045.066.019.053.013.058.038.032.011.047.032.036.0
1015.014.037.011.051.092.019.025.019.047.030.012.016.052.034.026.0
1123.010.033.035.083.010.011.0101.029.012.030.049.012.06.029.027.0
122.030.070.045.01.010.06.021.02.07.056.038.04.024.0119.065.0
131.07.01.00.04.056.03.08.014.0208.07.022.04.0124.08.033.0
142.015.04.02.020.0362.03.010.05.011.01.02.08.040.08.07.0
159.06.014.06.0192.0165.021.050.06.04.03.03.04.09.02.06.0
1663.026.090.032.0115.015.020.034.014.011.011.04.017.06.031.011.0
1738.038.0113.020.014.015.013.016.021.034.074.023.09.016.045.011.0
1829.012.026.015.020.041.010.032.052.068.078.047.04.023.016.027.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.1140.219-0.008-0.26-0.490.425-1.2150.269-0.9380.219-0.220.339-1.770.8680.3390.112
02-4.4-0.22-3.126-0.439-3.1261.082-3.1261.213-3.1260.841-3.1260.083-2.5840.726-3.1260.881
03-4.4-4.4-4.4-1.975-4.4-4.4-2.5842.084-4.4-4.4-4.4-1.975-4.4-4.4-1.2151.972
04-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-1.022-4.4-3.126-3.1262.733-3.126
05-4.4-4.4-3.126-4.4-4.4-4.4-3.126-4.4-2.584-2.2342.731-1.454-4.4-4.4-3.126-4.4
06-4.4-2.584-4.4-4.4-4.4-2.584-4.4-3.1260.8142.531-1.975-0.658-4.4-1.6-4.4-3.126
07-0.181-0.543-1.215-0.5431.4971.124-0.6581.579-3.126-2.584-4.4-3.126-1.77-1.454-2.234-2.234
08-0.5990.4040.7560.293-0.5430.404-0.5990.293-1.975-0.721-1.77-1.975-1.0220.8550.5040.193
09-1.328-0.658-0.49-1.4540.3610.741-0.490.523-0.860.6130.1930.023-1.0220.4040.0230.14
10-0.721-0.7880.167-1.0220.4851.072-0.49-0.22-0.490.404-0.04-0.938-0.6580.5040.083-0.181
11-0.302-1.1140.0540.1120.969-1.114-1.0221.165-0.074-0.938-0.040.445-0.938-1.6-0.074-0.144
12-2.584-0.040.80.361-3.126-1.114-1.6-0.392-2.584-1.4540.5780.193-1.975-0.261.3280.726
13-3.126-1.454-3.126-4.4-1.9750.578-2.234-1.328-0.7881.885-1.454-0.346-1.9751.369-1.3280.054
14-2.584-0.721-1.975-2.584-0.4392.438-2.234-1.114-1.77-1.022-3.126-2.584-1.3280.244-1.328-1.454
15-1.215-1.6-0.788-1.61.8051.654-0.3920.465-1.6-1.975-2.234-2.234-1.975-1.215-2.584-1.6
160.695-0.1811.050.0231.294-0.721-0.4390.083-0.788-1.022-1.022-1.975-0.599-1.6-0.008-1.022
170.1930.1931.276-0.439-0.788-0.721-0.86-0.658-0.3920.0830.855-0.302-1.215-0.6580.361-1.022
18-0.074-0.938-0.181-0.721-0.4390.269-1.1140.0230.5040.7710.9070.404-1.975-0.302-0.658-0.144