Model info
| Transcription factor | Nfkb2 | ||||||||
| Model | NFKB2_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | KGGRAAdYCCC | ||||||||
| Best auROC (human) | 0.977 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 4 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 500 | ||||||||
| TF family | NF-kappaB-related factors {6.1.1} | ||||||||
| TF subfamily | NF-kappaB p50 subunit-like factors {6.1.1.1} | ||||||||
| MGI | MGI:1099800 | ||||||||
| EntrezGene | GeneID:18034 (SSTAR profile) | ||||||||
| UniProt ID | NFKB2_MOUSE | ||||||||
| UniProt AC | Q9WTK5 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nfkb2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 59.0 | 26.0 | 333.0 | 82.0 |
| 02 | 32.0 | 1.0 | 459.0 | 8.0 |
| 03 | 21.0 | 1.0 | 463.0 | 15.0 |
| 04 | 272.0 | 2.0 | 210.0 | 16.0 |
| 05 | 406.0 | 39.0 | 54.0 | 1.0 |
| 06 | 486.0 | 4.0 | 6.0 | 4.0 |
| 07 | 93.0 | 61.0 | 229.0 | 117.0 |
| 08 | 44.0 | 236.0 | 14.0 | 206.0 |
| 09 | 66.0 | 434.0 | 0.0 | 0.0 |
| 10 | 1.0 | 488.0 | 1.0 | 10.0 |
| 11 | 49.0 | 418.0 | 10.0 | 23.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.737 | -1.525 | 0.972 | -0.415 |
| 02 | -1.328 | -3.903 | 1.292 | -2.584 |
| 03 | -1.725 | -3.903 | 1.3 | -2.034 |
| 04 | 0.771 | -3.573 | 0.514 | -1.975 |
| 05 | 1.17 | -1.138 | -0.823 | -3.903 |
| 06 | 1.349 | -3.126 | -2.819 | -3.126 |
| 07 | -0.291 | -0.705 | 0.6 | -0.065 |
| 08 | -1.022 | 0.63 | -2.096 | 0.495 |
| 09 | -0.628 | 1.236 | -4.4 | -4.4 |
| 10 | -3.903 | 1.353 | -3.903 | -2.394 |
| 11 | -0.918 | 1.199 | -2.394 | -1.64 |