Transcription factor | Nfyc | ||||||||
Model | NFYC_MOUSE.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 17 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nnbbRRCCAATSASvRn | ||||||||
Best auROC (human) | 0.844 | ||||||||
Best auROC (mouse) | 0.989 | ||||||||
Peak sets in benchmark (human) | 4 | ||||||||
Peak sets in benchmark (mouse) | 4 | ||||||||
Aligned words | 507 | ||||||||
TF family | Heteromeric CCAAT-binding factors {4.2.1} | ||||||||
TF subfamily | NF-YC {4.2.1.0.3} | ||||||||
MGI | MGI:107901 | ||||||||
EntrezGene | GeneID:18046 (SSTAR profile) | ||||||||
UniProt ID | NFYC_MOUSE | ||||||||
UniProt AC | P70353 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Nfyc expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 50.0 | 13.0 | 28.0 | 16.0 | 68.0 | 28.0 | 36.0 | 44.0 | 29.0 | 22.0 | 21.0 | 10.0 | 38.0 | 35.0 | 29.0 | 32.0 |
02 | 19.0 | 60.0 | 38.0 | 68.0 | 10.0 | 18.0 | 20.0 | 50.0 | 19.0 | 51.0 | 19.0 | 25.0 | 11.0 | 42.0 | 9.0 | 40.0 |
03 | 5.0 | 35.0 | 7.0 | 12.0 | 11.0 | 51.0 | 17.0 | 92.0 | 8.0 | 36.0 | 19.0 | 23.0 | 14.0 | 75.0 | 27.0 | 67.0 |
04 | 21.0 | 3.0 | 14.0 | 0.0 | 123.0 | 27.0 | 39.0 | 8.0 | 36.0 | 3.0 | 31.0 | 0.0 | 87.0 | 11.0 | 78.0 | 18.0 |
05 | 68.0 | 8.0 | 176.0 | 15.0 | 23.0 | 0.0 | 11.0 | 10.0 | 72.0 | 9.0 | 58.0 | 23.0 | 14.0 | 2.0 | 6.0 | 4.0 |
06 | 0.0 | 177.0 | 0.0 | 0.0 | 0.0 | 19.0 | 0.0 | 0.0 | 0.0 | 251.0 | 0.0 | 0.0 | 0.0 | 51.0 | 0.0 | 1.0 |
07 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 494.0 | 2.0 | 2.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 0.0 | 491.0 | 0.0 | 0.0 | 4.0 | 2.0 | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 | 0.0 | 0.0 |
09 | 494.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 4.0 | 0.0 | 0.0 | 0.0 |
10 | 0.0 | 6.0 | 0.0 | 492.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 |
11 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 5.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 41.0 | 309.0 | 125.0 | 18.0 |
12 | 15.0 | 2.0 | 24.0 | 1.0 | 261.0 | 14.0 | 36.0 | 3.0 | 83.0 | 0.0 | 42.0 | 0.0 | 14.0 | 0.0 | 4.0 | 0.0 |
13 | 54.0 | 52.0 | 248.0 | 19.0 | 1.0 | 7.0 | 5.0 | 3.0 | 22.0 | 23.0 | 57.0 | 4.0 | 2.0 | 0.0 | 2.0 | 0.0 |
14 | 43.0 | 21.0 | 13.0 | 2.0 | 35.0 | 9.0 | 26.0 | 12.0 | 181.0 | 70.0 | 48.0 | 13.0 | 13.0 | 5.0 | 3.0 | 5.0 |
15 | 122.0 | 10.0 | 117.0 | 23.0 | 33.0 | 0.0 | 53.0 | 19.0 | 44.0 | 8.0 | 26.0 | 12.0 | 10.0 | 1.0 | 20.0 | 1.0 |
16 | 33.0 | 60.0 | 80.0 | 36.0 | 9.0 | 4.0 | 5.0 | 1.0 | 45.0 | 73.0 | 53.0 | 45.0 | 12.0 | 8.0 | 20.0 | 15.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 0.467 | -0.858 | -0.106 | -0.656 | 0.773 | -0.106 | 0.142 | 0.341 | -0.072 | -0.344 | -0.39 | -1.112 | 0.195 | 0.114 | -0.072 | 0.025 |
02 | -0.488 | 0.648 | 0.195 | 0.773 | -1.112 | -0.541 | -0.437 | 0.467 | -0.488 | 0.487 | -0.488 | -0.218 | -1.02 | 0.294 | -1.213 | 0.246 |
03 | -1.768 | 0.114 | -1.452 | -0.936 | -1.02 | 0.487 | -0.597 | 1.074 | -1.326 | 0.142 | -0.488 | -0.3 | -0.786 | 0.87 | -0.142 | 0.758 |
04 | -0.39 | -2.232 | -0.786 | -4.398 | 1.363 | -0.142 | 0.221 | -1.326 | 0.142 | -2.232 | -0.006 | -4.398 | 1.018 | -1.02 | 0.909 | -0.541 |
05 | 0.773 | -1.326 | 1.72 | -0.719 | -0.3 | -4.398 | -1.02 | -1.112 | 0.83 | -1.213 | 0.615 | -0.3 | -0.786 | -2.582 | -1.598 | -1.973 |
06 | -4.398 | 1.726 | -4.398 | -4.398 | -4.398 | -0.488 | -4.398 | -4.398 | -4.398 | 2.075 | -4.398 | -4.398 | -4.398 | 0.487 | -4.398 | -3.124 |
07 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | 2.751 | -2.582 | -2.582 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -3.124 | -4.398 | -4.398 |
08 | -4.398 | -4.398 | -4.398 | -4.398 | 2.745 | -4.398 | -4.398 | -1.973 | -2.582 | -4.398 | -4.398 | -4.398 | -2.582 | -4.398 | -4.398 | -4.398 |
09 | 2.751 | -4.398 | -3.124 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -1.973 | -4.398 | -4.398 | -4.398 |
10 | -4.398 | -1.598 | -4.398 | 2.747 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -3.124 | -4.398 | -4.398 | -4.398 | -4.398 |
11 | -4.398 | -4.398 | -4.398 | -4.398 | -3.124 | -1.768 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | 0.271 | 2.282 | 1.379 | -0.541 |
12 | -0.719 | -2.582 | -0.258 | -3.124 | 2.114 | -0.786 | 0.142 | -2.232 | 0.971 | -4.398 | 0.294 | -4.398 | -0.786 | -4.398 | -1.973 | -4.398 |
13 | 0.544 | 0.506 | 2.063 | -0.488 | -3.124 | -1.452 | -1.768 | -2.232 | -0.344 | -0.3 | 0.597 | -1.973 | -2.582 | -4.398 | -2.582 | -4.398 |
14 | 0.318 | -0.39 | -0.858 | -2.582 | 0.114 | -1.213 | -0.179 | -0.936 | 1.748 | 0.802 | 0.427 | -0.858 | -0.858 | -1.768 | -2.232 | -1.768 |
15 | 1.355 | -1.112 | 1.313 | -0.3 | 0.056 | -4.398 | 0.525 | -0.488 | 0.341 | -1.326 | -0.179 | -0.936 | -1.112 | -3.124 | -0.437 | -3.124 |
16 | 0.056 | 0.648 | 0.934 | 0.142 | -1.213 | -1.973 | -1.768 | -3.124 | 0.363 | 0.843 | 0.525 | 0.363 | -0.936 | -1.326 | -0.437 | -0.719 |