Model info
| Transcription factor | NKX2-3 (GeneCards) | ||||||||
| Model | NKX23_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | ndbAAGTGKbh | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 1260 | ||||||||
| TF family | NK-related factors {3.1.2} | ||||||||
| TF subfamily | NK-4 {3.1.2.17} | ||||||||
| HGNC | HGNC:7836 | ||||||||
| EntrezGene | GeneID:159296 (SSTAR profile) | ||||||||
| UniProt ID | NKX23_HUMAN | ||||||||
| UniProt AC | Q8TAU0 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | NKX2-3 expression | ||||||||
| ReMap ChIP-seq dataset list | NKX2-3 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 173.996 | 316.743 | 380.69 | 375.58 |
| 02 | 190.57 | 150.121 | 159.521 | 746.796 |
| 03 | 106.746 | 378.277 | 164.808 | 597.177 |
| 04 | 1142.036 | 7.956 | 75.269 | 21.747 |
| 05 | 1173.057 | 5.304 | 63.457 | 5.19 |
| 06 | 7.426 | 6.251 | 1224.845 | 8.487 |
| 07 | 32.324 | 3.419 | 36.191 | 1175.073 |
| 08 | 26.752 | 7.132 | 1203.87 | 9.254 |
| 09 | 32.296 | 132.814 | 923.236 | 158.662 |
| 10 | 154.781 | 246.436 | 350.342 | 495.45 |
| 11 | 274.24 | 246.818 | 225.35 | 500.6 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.579 | 0.016 | 0.199 | 0.185 |
| 02 | -0.489 | -0.725 | -0.665 | 0.87 |
| 03 | -1.061 | 0.192 | -0.632 | 0.647 |
| 04 | 1.294 | -3.472 | -1.403 | -2.59 |
| 05 | 1.321 | -3.79 | -1.57 | -3.806 |
| 06 | -3.528 | -3.664 | 1.364 | -3.419 |
| 07 | -2.218 | -4.099 | -2.111 | 1.323 |
| 08 | -2.397 | -3.56 | 1.347 | -3.347 |
| 09 | -2.219 | -0.846 | 1.082 | -0.67 |
| 10 | -0.694 | -0.234 | 0.116 | 0.461 |
| 11 | -0.127 | -0.232 | -0.322 | 0.471 |