Transcription factor | Nkx2-5 | ||||||||
Model | NKX25_MOUSE.H11DI.0.B | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 11 | ||||||||
Quality | B | ||||||||
Motif rank | 0 | ||||||||
Consensus | nbhKGAGTGbn | ||||||||
Best auROC (human) | 0.662 | ||||||||
Best auROC (mouse) | 0.882 | ||||||||
Peak sets in benchmark (human) | 2 | ||||||||
Peak sets in benchmark (mouse) | 7 | ||||||||
Aligned words | 525 | ||||||||
TF family | NK-related factors {3.1.2} | ||||||||
TF subfamily | NK-4 {3.1.2.17} | ||||||||
MGI | MGI:97350 | ||||||||
EntrezGene | GeneID:18091 (SSTAR profile) | ||||||||
UniProt ID | NKX25_MOUSE | ||||||||
UniProt AC | P42582 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Nkx2-5 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 13.0 | 52.0 | 47.0 | 13.0 | 19.0 | 41.0 | 6.0 | 30.0 | 5.0 | 55.0 | 47.0 | 8.0 | 10.0 | 65.0 | 65.0 | 24.0 |
02 | 12.0 | 13.0 | 2.0 | 20.0 | 66.0 | 39.0 | 9.0 | 99.0 | 34.0 | 44.0 | 2.0 | 85.0 | 9.0 | 19.0 | 5.0 | 42.0 |
03 | 18.0 | 3.0 | 41.0 | 59.0 | 11.0 | 1.0 | 2.0 | 101.0 | 0.0 | 3.0 | 4.0 | 11.0 | 10.0 | 1.0 | 88.0 | 147.0 |
04 | 0.0 | 0.0 | 39.0 | 0.0 | 0.0 | 0.0 | 8.0 | 0.0 | 13.0 | 0.0 | 122.0 | 0.0 | 21.0 | 0.0 | 296.0 | 1.0 |
05 | 34.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 464.0 | 1.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 |
06 | 1.0 | 0.0 | 498.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
07 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 151.0 | 0.0 | 1.0 | 347.0 | 0.0 | 0.0 | 0.0 | 0.0 |
08 | 2.0 | 0.0 | 148.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 9.0 | 3.0 | 334.0 | 2.0 |
09 | 0.0 | 7.0 | 4.0 | 0.0 | 0.0 | 1.0 | 0.0 | 2.0 | 11.0 | 158.0 | 212.0 | 102.0 | 0.0 | 1.0 | 2.0 | 0.0 |
10 | 3.0 | 4.0 | 1.0 | 3.0 | 31.0 | 59.0 | 8.0 | 69.0 | 59.0 | 66.0 | 60.0 | 33.0 | 12.0 | 28.0 | 26.0 | 38.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -0.86 | 0.504 | 0.404 | -0.86 | -0.49 | 0.269 | -1.6 | -0.04 | -1.77 | 0.56 | 0.404 | -1.328 | -1.114 | 0.726 | 0.726 | -0.26 |
02 | -0.938 | -0.86 | -2.584 | -0.439 | 0.741 | 0.219 | -1.215 | 1.145 | 0.083 | 0.339 | -2.584 | 0.993 | -1.215 | -0.49 | -1.77 | 0.293 |
03 | -0.543 | -2.234 | 0.269 | 0.63 | -1.022 | -3.126 | -2.584 | 1.165 | -4.4 | -2.234 | -1.975 | -1.022 | -1.114 | -3.126 | 1.027 | 1.539 |
04 | -4.4 | -4.4 | 0.219 | -4.4 | -4.4 | -4.4 | -1.328 | -4.4 | -0.86 | -4.4 | 1.353 | -4.4 | -0.392 | -4.4 | 2.237 | -3.126 |
05 | 0.083 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | 2.686 | -3.126 | -4.4 | -4.4 | -3.126 | -4.4 | -4.4 | -4.4 |
06 | -3.126 | -4.4 | 2.757 | -4.4 | -4.4 | -4.4 | -3.126 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 |
07 | -4.4 | -4.4 | -4.4 | -3.126 | -4.4 | -4.4 | -4.4 | -4.4 | 1.565 | -4.4 | -3.126 | 2.396 | -4.4 | -4.4 | -4.4 | -4.4 |
08 | -2.584 | -4.4 | 1.545 | -3.126 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -3.126 | -4.4 | -1.215 | -2.234 | 2.358 | -2.584 |
09 | -4.4 | -1.454 | -1.975 | -4.4 | -4.4 | -3.126 | -4.4 | -2.584 | -1.022 | 1.611 | 1.904 | 1.174 | -4.4 | -3.126 | -2.584 | -4.4 |
10 | -2.234 | -1.975 | -3.126 | -2.234 | -0.008 | 0.63 | -1.328 | 0.785 | 0.63 | 0.741 | 0.646 | 0.054 | -0.938 | -0.108 | -0.181 | 0.193 |