Model info
| Transcription factor | NKX6-1 (GeneCards) | ||||||||
| Model | NKX61_HUMAN.H11MO.1.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 7 | ||||||||
| Quality | B | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | hAATGRv | ||||||||
| Best auROC (human) | 0.547 | ||||||||
| Best auROC (mouse) | 0.846 | ||||||||
| Peak sets in benchmark (human) | 3 | ||||||||
| Peak sets in benchmark (mouse) | 8 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | NK-related factors {3.1.2} | ||||||||
| TF subfamily | NK-6 {3.1.2.19} | ||||||||
| HGNC | HGNC:7839 | ||||||||
| EntrezGene | GeneID:4825 (SSTAR profile) | ||||||||
| UniProt ID | NKX61_HUMAN | ||||||||
| UniProt AC | P78426 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | NKX6-1 expression | ||||||||
| ReMap ChIP-seq dataset list | NKX6-1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 189.0 | 66.0 | 36.0 | 209.0 |
| 02 | 460.0 | 3.0 | 37.0 | 0.0 |
| 03 | 497.0 | 1.0 | 2.0 | 0.0 |
| 04 | 0.0 | 0.0 | 3.0 | 497.0 |
| 05 | 0.0 | 0.0 | 500.0 | 0.0 |
| 06 | 279.0 | 1.0 | 218.0 | 2.0 |
| 07 | 199.0 | 138.0 | 135.0 | 28.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.409 | -0.628 | -1.215 | 0.509 |
| 02 | 1.294 | -3.325 | -1.189 | -4.4 |
| 03 | 1.371 | -3.903 | -3.573 | -4.4 |
| 04 | -4.4 | -4.4 | -3.325 | 1.371 |
| 05 | -4.4 | -4.4 | 1.377 | -4.4 |
| 06 | 0.796 | -3.903 | 0.551 | -3.573 |
| 07 | 0.46 | 0.098 | 0.076 | -1.454 |