Transcription factor | Nr1d2 | ||||||||
Model | NR1D2_MOUSE.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 18 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nvvdvWvTRRGTCAbnvn | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | 0.898 | ||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | 12 | ||||||||
Aligned words | 511 | ||||||||
TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
TF subfamily | Rev-ErbA (NR1D) {2.1.2.3} | ||||||||
MGI | MGI:2449205 | ||||||||
EntrezGene | GeneID:353187 (SSTAR profile) | ||||||||
UniProt ID | NR1D2_MOUSE | ||||||||
UniProt AC | Q60674 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Nr1d2 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 26.0 | 27.0 | 97.0 | 8.0 | 37.0 | 24.0 | 9.0 | 7.0 | 45.0 | 16.0 | 65.0 | 12.0 | 30.0 | 20.0 | 57.0 | 20.0 |
02 | 33.0 | 10.0 | 82.0 | 13.0 | 33.0 | 27.0 | 14.0 | 13.0 | 55.0 | 23.0 | 130.0 | 20.0 | 15.0 | 2.0 | 26.0 | 4.0 |
03 | 42.0 | 7.0 | 69.0 | 18.0 | 22.0 | 14.0 | 1.0 | 25.0 | 55.0 | 7.0 | 122.0 | 68.0 | 18.0 | 4.0 | 14.0 | 14.0 |
04 | 89.0 | 21.0 | 23.0 | 4.0 | 16.0 | 5.0 | 4.0 | 7.0 | 141.0 | 44.0 | 11.0 | 10.0 | 33.0 | 57.0 | 18.0 | 17.0 |
05 | 185.0 | 4.0 | 12.0 | 78.0 | 73.0 | 9.0 | 7.0 | 38.0 | 18.0 | 13.0 | 8.0 | 17.0 | 8.0 | 2.0 | 8.0 | 20.0 |
06 | 30.0 | 74.0 | 157.0 | 23.0 | 4.0 | 9.0 | 12.0 | 3.0 | 10.0 | 15.0 | 7.0 | 3.0 | 16.0 | 45.0 | 74.0 | 18.0 |
07 | 0.0 | 2.0 | 6.0 | 52.0 | 3.0 | 4.0 | 5.0 | 131.0 | 5.0 | 9.0 | 18.0 | 218.0 | 2.0 | 4.0 | 17.0 | 24.0 |
08 | 7.0 | 0.0 | 2.0 | 1.0 | 8.0 | 0.0 | 10.0 | 1.0 | 27.0 | 0.0 | 19.0 | 0.0 | 131.0 | 6.0 | 284.0 | 4.0 |
09 | 21.0 | 1.0 | 146.0 | 5.0 | 3.0 | 0.0 | 3.0 | 0.0 | 117.0 | 2.0 | 154.0 | 42.0 | 1.0 | 0.0 | 4.0 | 1.0 |
10 | 4.0 | 13.0 | 120.0 | 5.0 | 0.0 | 0.0 | 3.0 | 0.0 | 9.0 | 16.0 | 280.0 | 2.0 | 1.0 | 4.0 | 42.0 | 1.0 |
11 | 4.0 | 1.0 | 3.0 | 6.0 | 2.0 | 1.0 | 1.0 | 29.0 | 4.0 | 13.0 | 30.0 | 398.0 | 0.0 | 0.0 | 0.0 | 8.0 |
12 | 0.0 | 10.0 | 0.0 | 0.0 | 0.0 | 15.0 | 0.0 | 0.0 | 0.0 | 26.0 | 3.0 | 5.0 | 5.0 | 412.0 | 11.0 | 13.0 |
13 | 4.0 | 0.0 | 0.0 | 1.0 | 445.0 | 7.0 | 0.0 | 11.0 | 9.0 | 0.0 | 4.0 | 1.0 | 15.0 | 1.0 | 0.0 | 2.0 |
14 | 60.0 | 143.0 | 186.0 | 84.0 | 3.0 | 2.0 | 0.0 | 3.0 | 0.0 | 2.0 | 2.0 | 0.0 | 2.0 | 2.0 | 9.0 | 2.0 |
15 | 25.0 | 12.0 | 20.0 | 8.0 | 52.0 | 21.0 | 16.0 | 60.0 | 56.0 | 43.0 | 40.0 | 58.0 | 15.0 | 13.0 | 30.0 | 31.0 |
16 | 26.0 | 23.0 | 83.0 | 16.0 | 34.0 | 26.0 | 16.0 | 13.0 | 26.0 | 22.0 | 36.0 | 22.0 | 29.0 | 16.0 | 87.0 | 25.0 |
17 | 30.0 | 14.0 | 58.0 | 13.0 | 30.0 | 21.0 | 4.0 | 32.0 | 42.0 | 40.0 | 83.0 | 57.0 | 7.0 | 18.0 | 27.0 | 24.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -0.181 | -0.144 | 1.124 | -1.328 | 0.167 | -0.26 | -1.215 | -1.454 | 0.361 | -0.658 | 0.726 | -0.938 | -0.04 | -0.439 | 0.595 | -0.439 |
02 | 0.054 | -1.114 | 0.957 | -0.86 | 0.054 | -0.144 | -0.788 | -0.86 | 0.56 | -0.302 | 1.416 | -0.439 | -0.721 | -2.584 | -0.181 | -1.975 |
03 | 0.293 | -1.454 | 0.785 | -0.543 | -0.346 | -0.788 | -3.126 | -0.22 | 0.56 | -1.454 | 1.353 | 0.771 | -0.543 | -1.975 | -0.788 | -0.788 |
04 | 1.039 | -0.392 | -0.302 | -1.975 | -0.658 | -1.77 | -1.975 | -1.454 | 1.497 | 0.339 | -1.022 | -1.114 | 0.054 | 0.595 | -0.543 | -0.599 |
05 | 1.768 | -1.975 | -0.938 | 0.907 | 0.841 | -1.215 | -1.454 | 0.193 | -0.543 | -0.86 | -1.328 | -0.599 | -1.328 | -2.584 | -1.328 | -0.439 |
06 | -0.04 | 0.855 | 1.604 | -0.302 | -1.975 | -1.215 | -0.938 | -2.234 | -1.114 | -0.721 | -1.454 | -2.234 | -0.658 | 0.361 | 0.855 | -0.543 |
07 | -4.4 | -2.584 | -1.6 | 0.504 | -2.234 | -1.975 | -1.77 | 1.424 | -1.77 | -1.215 | -0.543 | 1.932 | -2.584 | -1.975 | -0.599 | -0.26 |
08 | -1.454 | -4.4 | -2.584 | -3.126 | -1.328 | -4.4 | -1.114 | -3.126 | -0.144 | -4.4 | -0.49 | -4.4 | 1.424 | -1.6 | 2.196 | -1.975 |
09 | -0.392 | -3.126 | 1.532 | -1.77 | -2.234 | -4.4 | -2.234 | -4.4 | 1.311 | -2.584 | 1.585 | 0.293 | -3.126 | -4.4 | -1.975 | -3.126 |
10 | -1.975 | -0.86 | 1.336 | -1.77 | -4.4 | -4.4 | -2.234 | -4.4 | -1.215 | -0.658 | 2.182 | -2.584 | -3.126 | -1.975 | 0.293 | -3.126 |
11 | -1.975 | -3.126 | -2.234 | -1.6 | -2.584 | -3.126 | -3.126 | -0.074 | -1.975 | -0.86 | -0.04 | 2.533 | -4.4 | -4.4 | -4.4 | -1.328 |
12 | -4.4 | -1.114 | -4.4 | -4.4 | -4.4 | -0.721 | -4.4 | -4.4 | -4.4 | -0.181 | -2.234 | -1.77 | -1.77 | 2.568 | -1.022 | -0.86 |
13 | -1.975 | -4.4 | -4.4 | -3.126 | 2.645 | -1.454 | -4.4 | -1.022 | -1.215 | -4.4 | -1.975 | -3.126 | -0.721 | -3.126 | -4.4 | -2.584 |
14 | 0.646 | 1.511 | 1.773 | 0.981 | -2.234 | -2.584 | -4.4 | -2.234 | -4.4 | -2.584 | -2.584 | -4.4 | -2.584 | -2.584 | -1.215 | -2.584 |
15 | -0.22 | -0.938 | -0.439 | -1.328 | 0.504 | -0.392 | -0.658 | 0.646 | 0.578 | 0.316 | 0.244 | 0.613 | -0.721 | -0.86 | -0.04 | -0.008 |
16 | -0.181 | -0.302 | 0.969 | -0.658 | 0.083 | -0.181 | -0.658 | -0.86 | -0.181 | -0.346 | 0.14 | -0.346 | -0.074 | -0.658 | 1.016 | -0.22 |
17 | -0.04 | -0.788 | 0.613 | -0.86 | -0.04 | -0.392 | -1.975 | 0.023 | 0.293 | 0.244 | 0.969 | 0.595 | -1.454 | -0.543 | -0.144 | -0.26 |