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Model info
Transcription factorNr1h4
ModelNR1H4_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length22
Quality
A
Motif rank
0
ConsensusvRGKKSRvYGdCCbvbvKKbYv
Best auROC (human)
Best auROC (mouse)0.942
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)15
Aligned words472
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyLXR (NR1H) {2.1.2.7}
MGIMGI:1352464
EntrezGeneGeneID:20186
(SSTAR profile)
UniProt IDNR1H4_MOUSE
UniProt ACQ60641
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.1597100000000005
0.0005 8.08626
0.0001 12.172160000000002
GTEx tissue expression atlas Nr1h4 expression
Motifs in JASPAR
MA1110.1 (NR1H4; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0153.02.068.07.046.02.036.05.086.03.099.07.013.04.041.00.0
0211.02.0176.09.04.00.07.00.031.06.0194.013.03.01.014.01.0
032.03.043.01.02.00.07.00.034.010.0290.057.00.01.020.02.0
043.01.026.08.00.00.02.012.021.039.084.0216.00.03.019.038.0
050.020.03.01.00.036.02.05.03.0104.08.016.02.0188.054.030.0
062.00.03.00.0283.08.049.08.052.08.05.02.021.013.017.01.0
07157.089.082.030.011.05.08.05.023.026.016.09.02.04.05.00.0
0814.045.027.0107.03.017.04.0100.08.025.010.068.00.07.01.036.0
091.03.021.00.020.01.072.01.09.03.029.01.021.07.0281.02.0
1018.05.026.02.010.00.01.03.0187.054.0106.056.02.01.01.00.0
1126.0182.06.03.06.044.03.07.06.0109.08.011.02.049.03.07.0
121.036.02.01.030.0328.01.025.01.017.01.01.04.023.01.00.0
130.020.012.04.019.0123.0126.0136.00.01.02.02.00.014.010.03.0
141.05.011.02.042.057.022.037.019.084.035.012.018.055.050.022.0
1511.013.051.05.046.048.057.050.017.035.047.019.09.014.039.011.0
1620.020.042.01.049.029.020.012.054.072.057.011.08.018.053.06.0
1710.04.0114.03.012.01.0109.017.022.05.0114.031.02.01.022.05.0
186.04.035.01.04.01.03.03.025.031.0272.031.04.03.041.08.0
195.011.019.04.015.07.09.08.033.093.095.0130.02.012.08.021.0
200.044.06.05.03.082.012.026.03.0103.012.013.02.0120.015.026.0
211.05.00.02.0226.028.060.035.012.011.014.08.021.012.030.07.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.58-2.5280.828-1.3980.44-2.5280.197-1.7141.061-2.1781.202-1.398-0.803-1.9190.326-4.352
02-0.965-2.5281.775-1.158-1.919-4.352-1.398-4.3520.049-1.5431.872-0.803-2.178-3.072-0.731-3.072
03-2.528-2.1780.373-3.072-2.528-4.352-1.398-4.3520.14-1.0572.2740.652-4.352-3.072-0.383-2.528
04-2.178-3.072-0.125-1.271-4.352-4.352-2.528-0.881-0.3350.2761.0381.98-4.352-2.178-0.4330.25
05-4.352-0.383-2.178-3.072-4.3520.197-2.528-1.714-2.1781.251-1.271-0.601-2.5281.8410.5990.017
06-2.528-4.352-2.178-4.3522.249-1.2710.502-1.2710.561-1.271-1.714-2.528-0.335-0.803-0.542-3.072
071.6611.0961.0140.017-0.965-1.714-1.271-1.714-0.245-0.125-0.601-1.158-2.528-1.919-1.714-4.352
08-0.7310.418-0.0871.279-2.178-0.542-1.9191.212-1.271-0.163-1.0570.828-4.352-1.398-3.0720.197
09-3.072-2.178-0.335-4.352-0.383-3.0720.885-3.072-1.158-2.178-0.017-3.072-0.335-1.3982.242-2.528
10-0.486-1.714-0.125-2.528-1.057-4.352-3.072-2.1781.8360.5991.270.635-2.528-3.072-3.072-4.352
11-0.1251.809-1.543-2.178-1.5430.396-2.178-1.398-1.5431.298-1.271-0.965-2.5280.502-2.178-1.398
12-3.0720.197-2.528-3.0720.0172.397-3.072-0.163-3.072-0.542-3.072-3.072-1.919-0.245-3.072-4.352
13-4.352-0.383-0.881-1.919-0.4331.4181.4421.518-4.352-3.072-2.528-2.528-4.352-0.731-1.057-2.178
14-3.072-1.714-0.965-2.5280.3490.652-0.2890.224-0.4331.0380.169-0.881-0.4860.6170.522-0.289
15-0.965-0.8030.542-1.7140.440.4820.6520.522-0.5420.1690.461-0.433-1.158-0.7310.276-0.965
16-0.383-0.3830.349-3.0720.502-0.017-0.383-0.8810.5990.8850.652-0.965-1.271-0.4860.58-1.543
17-1.057-1.9191.342-2.178-0.881-3.0721.298-0.542-0.289-1.7141.3420.049-2.528-3.072-0.289-1.714
18-1.543-1.9190.169-3.072-1.919-3.072-2.178-2.178-0.1630.0492.210.049-1.919-2.1780.326-1.271
19-1.714-0.965-0.433-1.919-0.664-1.398-1.158-1.2710.1111.1391.1611.473-2.528-0.881-1.271-0.335
20-4.3520.396-1.543-1.714-2.1781.014-0.881-0.125-2.1781.241-0.881-0.803-2.5281.393-0.664-0.125
21-3.072-1.714-4.352-2.5282.025-0.0510.7030.169-0.881-0.965-0.731-1.271-0.335-0.8810.017-1.398