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Model info
Transcription factorNR5A2
(GeneCards)
ModelNR5A2_HUMAN.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv10
Model length16
Quality
B
Motif rank
0
ConsensusndbYCAAGGYCRnnnn
Best auROC (human)0.526
Best auROC (mouse)0.957
Peak sets in benchmark (human)4
Peak sets in benchmark (mouse)8
Aligned words501
TF familyFTZ-F1-related receptors (NR5) {2.1.5}
TF subfamilyLRH-1 (NR5A2) {2.1.5.0.2}
HGNCHGNC:7984
EntrezGeneGeneID:2494
(SSTAR profile)
UniProt IDNR5A2_HUMAN
UniProt ACO00482
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.83841
0.0005 11.16791
0.0001 15.77816
GTEx tissue expression atlas NR5A2 expression
ReMap ChIP-seq dataset list NR5A2 datasets
Motifs in JASPAR
MA0505.1 (Nr5a2; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0144.52718.993103.5621.20428.716.6112.85740.88519.21125.99532.8625.99417.74611.92557.11241.81
0219.95618.79537.28934.1549.02222.5750.92231.00516.77943.18353.53582.8919.50639.06429.34551.979
038.57220.4294.19222.0696.95159.5280.057.1391.93556.48.23554.5212.41336.4354.21146.97
040.028.9580.9130.00.899164.5515.3112.030.013.6912.9470.01.007258.9419.8540.897
051.9070.00.00.0461.1711.8592.2020.90728.1340.00.8910.02.030.00.00.897
06473.3910.85915.8153.1771.8590.00.00.03.0940.00.00.01.8050.00.00.0
074.720.0475.4290.00.00.00.8590.00.00.014.9220.8930.00.02.3280.849
080.00.04.720.00.00.00.00.01.7730.0491.7650.00.00.01.7420.0
090.8990.8730.00.00.00.00.00.044.702181.40621.751250.3680.00.00.00.0
101.78240.0761.7621.9826.579146.9591.20427.5380.020.7670.00.9843.118196.4185.79245.04
116.9640.883.6350.0336.93310.21820.54236.5276.0070.8441.9080.034.3357.70223.919.596
1280.047107.845135.60560.7415.5113.9790.8739.289.28918.79513.5388.3734.68622.31111.347.787
1339.3419.03130.27210.8946.22945.10410.79350.80537.17960.22331.50832.44610.51816.59425.89433.175
1430.69840.66938.20523.69441.62656.1153.08140.1319.5229.58931.2918.06616.07242.69837.93430.611
1536.35213.55143.44914.56552.24924.483.89988.44338.66313.76535.31122.7719.55621.49732.92538.524
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.35-0.491.19-0.382-0.084-1.509-2.2770.266-0.479-0.1820.05-0.182-0.557-0.9440.5970.288
02-0.442-0.50.1750.088-1.213-0.32-3.184-0.008-0.6110.320.5330.968-1.1620.221-0.0620.504
03-1.262-0.419-1.933-0.343-1.4610.639-4.40.598-2.6110.585-1.30.551-0.9050.152-1.9291.538
04-4.4-0.075-3.191-4.4-3.2011.651-1.714-2.571-4.4-0.81-2.25-4.4-3.1212.104-0.447-3.203
05-2.624-4.4-4.4-4.42.68-2.644-2.502-3.195-0.104-4.4-3.208-4.4-2.571-4.4-4.4-3.203
062.706-3.233-0.669-2.183-2.644-4.4-4.4-4.4-2.207-4.4-4.4-4.4-2.669-4.4-4.4-4.4
07-1.823-4.42.711-4.4-4.4-4.4-3.233-4.4-4.4-4.4-0.726-3.206-4.4-4.4-2.455-3.241
08-4.4-4.4-1.823-4.4-4.4-4.4-4.4-4.4-2.684-4.42.744-4.4-4.4-4.4-2.698-4.4
09-3.201-3.222-4.4-4.4-4.4-4.4-4.4-4.40.3541.749-0.3572.07-4.4-4.4-4.4-4.4
10-2.680.246-2.689-2.591-1.5131.538-2.989-0.125-4.4-0.402-4.4-3.138-2.21.828-1.6330.362
11-1.459-3.216-2.062-4.42.367-1.093-0.4130.154-1.599-3.246-2.623-4.40.093-1.364-0.264-1.153
120.9331.231.4580.659-1.679-1.98-3.222-1.185-1.185-0.5-0.821-1.284-1.83-0.332-0.992-1.353
130.228-0.488-0.031-1.0320.3880.363-1.040.4810.1720.650.0080.037-1.065-0.622-0.1850.059
14-0.0180.2610.199-0.2730.2840.58-2.210.247-0.463-0.0540.001-0.539-0.6530.3090.192-0.02
150.15-0.820.326-0.7490.509-0.241-1.9991.0320.211-0.8040.121-0.312-0.461-0.3690.0520.207