Model info
| Transcription factor | NR5A2 (GeneCards) | ||||||||
| Model | NR5A2_HUMAN.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dbYCAAGGhCR | ||||||||
| Best auROC (human) | 0.555 | ||||||||
| Best auROC (mouse) | 0.959 | ||||||||
| Peak sets in benchmark (human) | 4 | ||||||||
| Peak sets in benchmark (mouse) | 8 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | FTZ-F1-related receptors (NR5) {2.1.5} | ||||||||
| TF subfamily | LRH-1 (NR5A2) {2.1.5.0.2} | ||||||||
| HGNC | HGNC:7984 | ||||||||
| EntrezGene | GeneID:2494 (SSTAR profile) | ||||||||
| UniProt ID | NR5A2_HUMAN | ||||||||
| UniProt AC | O00482 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | NR5A2 expression | ||||||||
| ReMap ChIP-seq dataset list | NR5A2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 91.0 | 88.0 | 213.0 | 108.0 |
| 02 | 32.0 | 144.0 | 133.0 | 191.0 |
| 03 | 19.0 | 222.0 | 17.0 | 242.0 |
| 04 | 2.0 | 474.0 | 24.0 | 0.0 |
| 05 | 492.0 | 5.0 | 3.0 | 0.0 |
| 06 | 470.0 | 1.0 | 15.0 | 14.0 |
| 07 | 1.0 | 1.0 | 497.0 | 1.0 |
| 08 | 1.0 | 2.0 | 495.0 | 2.0 |
| 09 | 62.0 | 213.0 | 19.0 | 206.0 |
| 10 | 11.0 | 414.0 | 5.0 | 70.0 |
| 11 | 373.0 | 14.0 | 68.0 | 45.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.313 | -0.346 | 0.528 | -0.144 |
| 02 | -1.328 | 0.14 | 0.061 | 0.42 |
| 03 | -1.818 | 0.569 | -1.92 | 0.655 |
| 04 | -3.573 | 1.324 | -1.6 | -4.4 |
| 05 | 1.361 | -2.961 | -3.325 | -4.4 |
| 06 | 1.315 | -3.903 | -2.034 | -2.096 |
| 07 | -3.903 | -3.903 | 1.371 | -3.903 |
| 08 | -3.903 | -3.573 | 1.367 | -3.573 |
| 09 | -0.689 | 0.528 | -1.818 | 0.495 |
| 10 | -2.311 | 1.189 | -2.961 | -0.57 |
| 11 | 1.085 | -2.096 | -0.599 | -1.0 |