Model info
| Transcription factor | NR6A1 (GeneCards) | ||||||||
| Model | NR6A1_HUMAN.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 13 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RAGKTCAAGKTCA | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 51 | ||||||||
| TF family | GCNF-related receptors (NR6) {2.1.6} | ||||||||
| TF subfamily | GCNF (NR6A1) {2.1.6.0.1} | ||||||||
| HGNC | HGNC:7985 | ||||||||
| EntrezGene | GeneID:2649 (SSTAR profile) | ||||||||
| UniProt ID | NR6A1_HUMAN | ||||||||
| UniProt AC | Q15406 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | NR6A1 expression | ||||||||
| ReMap ChIP-seq dataset list | NR6A1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 38.694 | 3.472 | 5.361 | 2.472 |
| 02 | 47.0 | 1.0 | 1.0 | 1.0 |
| 03 | 2.0 | 0.0 | 46.889 | 1.111 |
| 04 | 0.0 | 2.0 | 19.0 | 29.0 |
| 05 | 0.0 | 1.0 | 0.0 | 49.0 |
| 06 | 1.0 | 49.0 | 0.0 | 0.0 |
| 07 | 49.0 | 1.0 | 0.0 | 0.0 |
| 08 | 43.778 | 2.111 | 1.0 | 3.111 |
| 09 | 0.0 | 1.0 | 44.778 | 4.222 |
| 10 | 1.0 | 0.0 | 30.0 | 19.0 |
| 11 | 2.0 | 4.778 | 2.0 | 41.222 |
| 12 | 2.111 | 42.889 | 0.0 | 5.0 |
| 13 | 42.778 | 2.111 | 2.111 | 3.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.08 | -1.108 | -0.754 | -1.363 |
| 02 | 1.27 | -1.919 | -1.919 | -1.919 |
| 03 | -1.51 | -2.623 | 1.267 | -1.864 |
| 04 | -2.623 | -1.51 | 0.394 | 0.799 |
| 05 | -2.623 | -1.919 | -2.623 | 1.311 |
| 06 | -1.919 | 1.311 | -2.623 | -2.623 |
| 07 | 1.311 | -1.919 | -2.623 | -2.623 |
| 08 | 1.2 | -1.473 | -1.919 | -1.193 |
| 09 | -2.623 | -1.919 | 1.222 | -0.952 |
| 10 | -1.919 | -2.623 | 0.832 | 0.394 |
| 11 | -1.51 | -0.851 | -1.51 | 1.141 |
| 12 | -1.473 | 1.18 | -2.623 | -0.813 |
| 13 | 1.178 | -1.473 | -1.473 | -1.22 |