Transcription factor | Nr6a1 | ||||||||
Model | NR6A1_MOUSE.H11DI.0.C | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 16 | ||||||||
Quality | C | ||||||||
Motif rank | 0 | ||||||||
Consensus | nvdddbYCAWRKbYRn | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | 0.802 | ||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | 5 | ||||||||
Aligned words | 505 | ||||||||
TF family | GCNF-related receptors (NR6) {2.1.6} | ||||||||
TF subfamily | GCNF (NR6A1) {2.1.6.0.1} | ||||||||
MGI | MGI:1352459 | ||||||||
EntrezGene | GeneID:14536 (SSTAR profile) | ||||||||
UniProt ID | NR6A1_MOUSE | ||||||||
UniProt AC | Q64249 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Nr6a1 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 21.0 | 40.0 | 33.0 | 29.0 | 56.0 | 57.0 | 6.0 | 19.0 | 39.0 | 41.0 | 19.0 | 8.0 | 30.0 | 57.0 | 38.0 | 6.0 |
02 | 62.0 | 11.0 | 47.0 | 26.0 | 138.0 | 16.0 | 12.0 | 29.0 | 36.0 | 15.0 | 28.0 | 17.0 | 24.0 | 5.0 | 21.0 | 12.0 |
03 | 179.0 | 26.0 | 21.0 | 34.0 | 20.0 | 13.0 | 6.0 | 8.0 | 69.0 | 7.0 | 21.0 | 11.0 | 28.0 | 9.0 | 24.0 | 23.0 |
04 | 64.0 | 13.0 | 188.0 | 31.0 | 22.0 | 3.0 | 11.0 | 19.0 | 23.0 | 3.0 | 28.0 | 18.0 | 16.0 | 7.0 | 19.0 | 34.0 |
05 | 7.0 | 28.0 | 54.0 | 36.0 | 4.0 | 10.0 | 2.0 | 10.0 | 4.0 | 18.0 | 107.0 | 117.0 | 2.0 | 19.0 | 41.0 | 40.0 |
06 | 1.0 | 8.0 | 0.0 | 8.0 | 4.0 | 34.0 | 0.0 | 37.0 | 3.0 | 87.0 | 6.0 | 108.0 | 8.0 | 46.0 | 1.0 | 148.0 |
07 | 0.0 | 14.0 | 2.0 | 0.0 | 7.0 | 162.0 | 3.0 | 3.0 | 2.0 | 3.0 | 2.0 | 0.0 | 6.0 | 277.0 | 17.0 | 1.0 |
08 | 13.0 | 2.0 | 0.0 | 0.0 | 421.0 | 26.0 | 7.0 | 2.0 | 22.0 | 0.0 | 2.0 | 0.0 | 3.0 | 1.0 | 0.0 | 0.0 |
09 | 361.0 | 22.0 | 22.0 | 54.0 | 20.0 | 0.0 | 2.0 | 7.0 | 7.0 | 0.0 | 1.0 | 1.0 | 1.0 | 1.0 | 0.0 | 0.0 |
10 | 51.0 | 4.0 | 306.0 | 28.0 | 5.0 | 1.0 | 12.0 | 5.0 | 2.0 | 1.0 | 21.0 | 1.0 | 4.0 | 0.0 | 46.0 | 12.0 |
11 | 9.0 | 3.0 | 37.0 | 13.0 | 0.0 | 1.0 | 2.0 | 3.0 | 17.0 | 5.0 | 227.0 | 136.0 | 3.0 | 0.0 | 36.0 | 7.0 |
12 | 2.0 | 11.0 | 6.0 | 10.0 | 4.0 | 0.0 | 1.0 | 4.0 | 12.0 | 99.0 | 57.0 | 134.0 | 7.0 | 30.0 | 30.0 | 92.0 |
13 | 6.0 | 16.0 | 0.0 | 3.0 | 9.0 | 105.0 | 5.0 | 21.0 | 10.0 | 71.0 | 3.0 | 10.0 | 13.0 | 174.0 | 16.0 | 37.0 |
14 | 23.0 | 2.0 | 8.0 | 5.0 | 313.0 | 18.0 | 15.0 | 20.0 | 7.0 | 2.0 | 8.0 | 7.0 | 33.0 | 5.0 | 22.0 | 11.0 |
15 | 86.0 | 65.0 | 133.0 | 92.0 | 6.0 | 6.0 | 2.0 | 13.0 | 12.0 | 13.0 | 8.0 | 20.0 | 22.0 | 2.0 | 6.0 | 13.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -0.39 | 0.246 | 0.056 | -0.072 | 0.58 | 0.597 | -1.598 | -0.488 | 0.221 | 0.271 | -0.488 | -1.326 | -0.038 | 0.597 | 0.195 | -1.598 |
02 | 0.681 | -1.02 | 0.406 | -0.179 | 1.478 | -0.656 | -0.936 | -0.072 | 0.142 | -0.719 | -0.106 | -0.597 | -0.258 | -1.768 | -0.39 | -0.936 |
03 | 1.737 | -0.179 | -0.39 | 0.085 | -0.437 | -0.858 | -1.598 | -1.326 | 0.787 | -1.452 | -0.39 | -1.02 | -0.106 | -1.213 | -0.258 | -0.3 |
04 | 0.713 | -0.858 | 1.786 | -0.006 | -0.344 | -2.232 | -1.02 | -0.488 | -0.3 | -2.232 | -0.106 | -0.541 | -0.656 | -1.452 | -0.488 | 0.085 |
05 | -1.452 | -0.106 | 0.544 | 0.142 | -1.973 | -1.112 | -2.582 | -1.112 | -1.973 | -0.541 | 1.224 | 1.313 | -2.582 | -0.488 | 0.271 | 0.246 |
06 | -3.124 | -1.326 | -4.398 | -1.326 | -1.973 | 0.085 | -4.398 | 0.169 | -2.232 | 1.018 | -1.598 | 1.233 | -1.326 | 0.385 | -3.124 | 1.547 |
07 | -4.398 | -0.786 | -2.582 | -4.398 | -1.452 | 1.638 | -2.232 | -2.232 | -2.582 | -2.232 | -2.582 | -4.398 | -1.598 | 2.173 | -0.597 | -3.124 |
08 | -0.858 | -2.582 | -4.398 | -4.398 | 2.591 | -0.179 | -1.452 | -2.582 | -0.344 | -4.398 | -2.582 | -4.398 | -2.232 | -3.124 | -4.398 | -4.398 |
09 | 2.438 | -0.344 | -0.344 | 0.544 | -0.437 | -4.398 | -2.582 | -1.452 | -1.452 | -4.398 | -3.124 | -3.124 | -3.124 | -3.124 | -4.398 | -4.398 |
10 | 0.487 | -1.973 | 2.272 | -0.106 | -1.768 | -3.124 | -0.936 | -1.768 | -2.582 | -3.124 | -0.39 | -3.124 | -1.973 | -4.398 | 0.385 | -0.936 |
11 | -1.213 | -2.232 | 0.169 | -0.858 | -4.398 | -3.124 | -2.582 | -2.232 | -0.597 | -1.768 | 1.974 | 1.463 | -2.232 | -4.398 | 0.142 | -1.452 |
12 | -2.582 | -1.02 | -1.598 | -1.112 | -1.973 | -4.398 | -3.124 | -1.973 | -0.936 | 1.147 | 0.597 | 1.448 | -1.452 | -0.038 | -0.038 | 1.074 |
13 | -1.598 | -0.656 | -4.398 | -2.232 | -1.213 | 1.205 | -1.768 | -0.39 | -1.112 | 0.816 | -2.232 | -1.112 | -0.858 | 1.709 | -0.656 | 0.169 |
14 | -0.3 | -2.582 | -1.326 | -1.768 | 2.295 | -0.541 | -0.719 | -0.437 | -1.452 | -2.582 | -1.326 | -1.452 | 0.056 | -1.768 | -0.344 | -1.02 |
15 | 1.006 | 0.728 | 1.441 | 1.074 | -1.598 | -1.598 | -2.582 | -0.858 | -0.936 | -0.858 | -1.326 | -0.437 | -0.344 | -2.582 | -1.598 | -0.858 |