Model info
| Transcription factor | Otx1 | ||||||||
| Model | OTX1_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 8 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nGGATTAn | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 8 | ||||||||
| TF family | Paired-related HD factors {3.1.3} | ||||||||
| TF subfamily | OTX {3.1.3.17} | ||||||||
| MGI | MGI:97450 | ||||||||
| EntrezGene | GeneID:18423 (SSTAR profile) | ||||||||
| UniProt ID | OTX1_MOUSE | ||||||||
| UniProt AC | P80205 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Otx1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 3.655 | 1.448 | 1.448 | 1.448 |
| 02 | 1.241 | 0.0 | 5.931 | 0.828 |
| 03 | 0.0 | 0.0 | 8.0 | 0.0 |
| 04 | 5.379 | 2.621 | 0.0 | 0.0 |
| 05 | 0.0 | 0.0 | 0.0 | 8.0 |
| 06 | 0.0 | 0.0 | 0.0 | 8.0 |
| 07 | 8.0 | 0.0 | 0.0 | 0.0 |
| 08 | 2.276 | 2.276 | 2.828 | 0.621 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.505 | -0.247 | -0.247 | -0.247 |
| 02 | -0.358 | -1.578 | 0.94 | -0.626 |
| 03 | -1.578 | -1.578 | 1.218 | -1.578 |
| 04 | 0.851 | 0.22 | -1.578 | -1.578 |
| 05 | -1.578 | -1.578 | -1.578 | 1.218 |
| 06 | -1.578 | -1.578 | -1.578 | 1.218 |
| 07 | 1.218 | -1.578 | -1.578 | -1.578 |
| 08 | 0.104 | 0.104 | 0.284 | -0.793 |