Model info
| Transcription factor | TP53 (GeneCards) | ||||||||
| Model | P53_HUMAN.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 13 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | dRRCATGYCYRKR | ||||||||
| Best auROC (human) | 0.988 | ||||||||
| Best auROC (mouse) | 0.981 | ||||||||
| Peak sets in benchmark (human) | 141 | ||||||||
| Peak sets in benchmark (mouse) | 39 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | p53-related factors {6.3.1} | ||||||||
| TF subfamily | p53 {6.3.1.0.1} | ||||||||
| HGNC | HGNC:11998 | ||||||||
| EntrezGene | GeneID:7157 (SSTAR profile) | ||||||||
| UniProt ID | P53_HUMAN | ||||||||
| UniProt AC | P04637 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | TP53 expression | ||||||||
| ReMap ChIP-seq dataset list | TP53 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 111.0 | 43.0 | 280.0 | 66.0 |
| 02 | 111.0 | 29.0 | 315.0 | 45.0 |
| 03 | 268.0 | 3.0 | 204.0 | 25.0 |
| 04 | 1.0 | 490.0 | 5.0 | 4.0 |
| 05 | 423.0 | 0.0 | 3.0 | 74.0 |
| 06 | 85.0 | 1.0 | 18.0 | 396.0 |
| 07 | 0.0 | 4.0 | 496.0 | 0.0 |
| 08 | 11.0 | 302.0 | 2.0 | 185.0 |
| 09 | 11.0 | 444.0 | 11.0 | 34.0 |
| 10 | 54.0 | 155.0 | 12.0 | 279.0 |
| 11 | 104.0 | 25.0 | 334.0 | 37.0 |
| 12 | 45.0 | 9.0 | 384.0 | 62.0 |
| 13 | 140.0 | 10.0 | 337.0 | 13.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.117 | -1.044 | 0.8 | -0.628 |
| 02 | -0.117 | -1.421 | 0.917 | -1.0 |
| 03 | 0.756 | -3.325 | 0.485 | -1.561 |
| 04 | -3.903 | 1.357 | -2.961 | -3.126 |
| 05 | 1.21 | -4.4 | -3.325 | -0.516 |
| 06 | -0.38 | -3.903 | -1.868 | 1.145 |
| 07 | -4.4 | -3.126 | 1.369 | -4.4 |
| 08 | -2.311 | 0.875 | -3.573 | 0.388 |
| 09 | -2.311 | 1.259 | -2.311 | -1.27 |
| 10 | -0.823 | 0.213 | -2.234 | 0.796 |
| 11 | -0.181 | -1.561 | 0.975 | -1.189 |
| 12 | -1.0 | -2.484 | 1.114 | -0.689 |
| 13 | 0.112 | -2.394 | 0.984 | -2.163 |