Model info
| Transcription factor | PAX4 (GeneCards) | ||||||||
| Model | PAX4_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 12 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hdhhTAATKMdh | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 934 | ||||||||
| TF family | Paired plus homeo domain {3.2.1} | ||||||||
| TF subfamily | PAX-4/6 {3.2.1.2} | ||||||||
| HGNC | HGNC:8618 | ||||||||
| EntrezGene | GeneID:5078 (SSTAR profile) | ||||||||
| UniProt ID | PAX4_HUMAN | ||||||||
| UniProt AC | O43316 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | PAX4 expression | ||||||||
| ReMap ChIP-seq dataset list | PAX4 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 196.702 | 107.0 | 99.561 | 531.064 |
| 02 | 401.611 | 118.16 | 168.007 | 246.548 |
| 03 | 482.12 | 176.882 | 124.803 | 150.522 |
| 04 | 198.458 | 415.161 | 79.632 | 241.076 |
| 05 | 0.0 | 8.928 | 0.0 | 925.399 |
| 06 | 790.526 | 20.088 | 2.976 | 120.737 |
| 07 | 870.133 | 5.208 | 0.0 | 58.986 |
| 08 | 0.0 | 35.923 | 1.488 | 896.916 |
| 09 | 59.891 | 36.827 | 167.024 | 670.585 |
| 10 | 403.553 | 412.481 | 61.751 | 56.543 |
| 11 | 357.8 | 79.659 | 414.765 | 82.103 |
| 12 | 238.762 | 365.13 | 81.891 | 248.543 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.17 | -0.772 | -0.843 | 0.817 |
| 02 | 0.539 | -0.674 | -0.327 | 0.054 |
| 03 | 0.721 | -0.276 | -0.62 | -0.435 |
| 04 | -0.162 | 0.572 | -1.062 | 0.031 |
| 05 | -4.924 | -3.096 | -4.924 | 1.371 |
| 06 | 1.214 | -2.379 | -3.916 | -0.653 |
| 07 | 1.31 | -3.527 | -4.924 | -1.355 |
| 08 | -4.924 | -1.833 | -4.298 | 1.34 |
| 09 | -1.34 | -1.809 | -0.333 | 1.05 |
| 10 | 0.544 | 0.566 | -1.31 | -1.396 |
| 11 | 0.424 | -1.062 | 0.571 | -1.032 |
| 12 | 0.022 | 0.444 | -1.035 | 0.062 |