Model info
| Transcription factor | PAX8 (GeneCards) | ||||||||
| Model | PAX8_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 14 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bYvAYYSRvSYRKd | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 37 | ||||||||
| TF family | Paired domain only {3.2.2} | ||||||||
| TF subfamily | PAX-2-like factors (partial homeobox) {3.2.2.2} | ||||||||
| HGNC | HGNC:8622 | ||||||||
| EntrezGene | GeneID:7849 (SSTAR profile) | ||||||||
| UniProt ID | PAX8_HUMAN | ||||||||
| UniProt AC | Q06710 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | PAX8 expression | ||||||||
| ReMap ChIP-seq dataset list | PAX8 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 4.292 | 7.827 | 14.673 | 10.128 |
| 02 | 3.03 | 8.248 | 3.535 | 22.107 |
| 03 | 9.09 | 14.027 | 11.783 | 2.02 |
| 04 | 30.748 | 2.581 | 2.02 | 1.571 |
| 05 | 5.05 | 16.608 | 0.0 | 15.262 |
| 06 | 2.525 | 5.892 | 1.571 | 26.933 |
| 07 | 3.142 | 16.16 | 16.608 | 1.01 |
| 08 | 17.17 | 2.132 | 14.476 | 3.142 |
| 09 | 15.823 | 12.12 | 4.938 | 4.04 |
| 10 | 1.01 | 8.304 | 25.081 | 2.525 |
| 11 | 5.274 | 19.526 | 0.0 | 12.12 |
| 12 | 14.364 | 4.04 | 18.516 | 0.0 |
| 13 | 0.0 | 3.591 | 16.833 | 16.496 |
| 14 | 12.709 | 2.048 | 16.075 | 6.088 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.668 | -0.149 | 0.43 | 0.085 |
| 02 | -0.947 | -0.102 | -0.826 | 0.82 |
| 03 | -0.014 | 0.388 | 0.225 | -1.243 |
| 04 | 1.139 | -1.068 | -1.243 | -1.41 |
| 05 | -0.532 | 0.547 | -2.419 | 0.467 |
| 06 | -1.084 | -0.4 | -1.41 | 1.011 |
| 07 | -0.918 | 0.521 | 0.547 | -1.667 |
| 08 | 0.579 | -1.206 | 0.417 | -0.918 |
| 09 | 0.501 | 0.251 | -0.551 | -0.718 |
| 10 | -1.667 | -0.096 | 0.942 | -1.084 |
| 11 | -0.495 | 0.701 | -2.419 | 0.251 |
| 12 | 0.41 | -0.718 | 0.65 | -2.419 |
| 13 | -2.419 | -0.813 | 0.56 | 0.541 |
| 14 | 0.295 | -1.234 | 0.516 | -0.371 |