Model info
| Transcription factor | PHOX2B (GeneCards) | ||||||||
| Model | PHX2B_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | WAATYTAATTA | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 24552 | ||||||||
| TF family | Paired-related HD factors {3.1.3} | ||||||||
| TF subfamily | PHOX {3.1.3.18} | ||||||||
| HGNC | HGNC:9143 | ||||||||
| EntrezGene | GeneID:8929 (SSTAR profile) | ||||||||
| UniProt ID | PHX2B_HUMAN | ||||||||
| UniProt AC | Q99453 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | PHOX2B expression | ||||||||
| ReMap ChIP-seq dataset list | PHOX2B datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2601.345 | 1641.401 | 1333.193 | 19431.915 |
| 02 | 22735.088 | 228.988 | 1232.943 | 810.835 |
| 03 | 24678.479 | 106.912 | 122.715 | 99.748 |
| 04 | 897.173 | 3849.034 | 428.293 | 19833.353 |
| 05 | 616.041 | 9156.502 | 2452.157 | 12783.154 |
| 06 | 0.0 | 8161.907 | 0.0 | 16845.947 |
| 07 | 20169.202 | 444.646 | 4112.625 | 281.381 |
| 08 | 24492.419 | 90.723 | 297.962 | 126.749 |
| 09 | 6.856 | 10.121 | 5.55 | 24985.326 |
| 10 | 670.411 | 472.65 | 51.101 | 23813.692 |
| 11 | 20723.041 | 982.81 | 1286.281 | 2015.721 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.876 | -1.336 | -1.544 | 1.134 |
| 02 | 1.291 | -3.296 | -1.622 | -2.04 |
| 03 | 1.373 | -4.046 | -3.911 | -4.113 |
| 04 | -1.939 | -0.485 | -2.675 | 1.154 |
| 05 | -2.314 | 0.381 | -0.935 | 0.715 |
| 06 | -7.812 | 0.266 | -7.812 | 0.991 |
| 07 | 1.171 | -2.638 | -0.419 | -3.092 |
| 08 | 1.365 | -4.206 | -3.036 | -3.879 |
| 09 | -6.502 | -6.203 | -6.651 | 1.385 |
| 10 | -2.229 | -2.577 | -4.759 | 1.337 |
| 11 | 1.198 | -1.848 | -1.58 | -1.131 |