PO4F2_HUMAN.H11MO.0.D motif - HOmo sapiens COmprehensive MOdel COllection

Check the newest release v12

Model info

Transcription factor

POU4F2
(GeneCards)

Model

PO4F2_HUMAN.H11MO.0.D

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

Integrative

Model release

HOCOMOCOv9

Model length

13

Quality

D

Motif rank

0

Consensus

YvTTAATGAKhnn

Best auROC (human)

Best auROC (mouse)

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

31

TF family

POU domain factors {3.1.10}

TF subfamily

POU4 (Brn-3-like factors) {3.1.10.4}

HGNC

EntrezGene

GeneID:5458
(SSTAR profile)

UniProt ID

UniProt AC

Q12837
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	5.370675
0.0005	6.205914999999999
0.0001	7.93642

GTEx tissue expression atlas

POU4F2 expression

ReMap ChIP-seq dataset list

POU4F2 datasets

Motifs in JASPAR

MA0683.1 (POU4F2; Homo sapiens)

PCM

	A	C	G	T
01	2.297	8.421	0.766	15.736
02	13.992	3.828	6.124	3.275
03	0.0	5.359	0.0	21.861
04	0.0	0.0	0.0	27.219
05	27.219	0.0	0.0	0.0
06	27.219	0.0	0.0	0.0
07	0.0	0.0	0.0	27.219
08	0.0	0.0	20.117	7.103
09	23.179	0.0	2.51	1.531
10	0.0	2.892	18.373	5.954
11	3.275	12.248	1.531	10.165
12	4.041	4.593	4.041	14.545
13	2.297	2.297	11.483	11.143

PWM

	A	C	G	T
01	-0.894	0.192	-1.568	0.775
02	0.664	-0.495	-0.093	-0.621
03	-2.223	-0.21	-2.223	1.09
04	-2.223	-2.223	-2.223	1.302
05	1.302	-2.223	-2.223	-2.223
06	1.302	-2.223	-2.223	-2.223
07	-2.223	-2.223	-2.223	1.302
08	-2.223	-2.223	1.01	0.038
09	1.146	-2.223	-0.828	-1.175
10	-2.223	-0.719	0.923	-0.118
11	-0.621	0.538	-1.175	0.365
12	-0.45	-0.342	-0.45	0.7
13	-0.894	-0.894	0.478	0.45