Model info
| Transcription factor | POU5F1 (GeneCards) | ||||||||
| Model | PO5F1_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 16 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bYWTTvWhATGYARAh | ||||||||
| Best auROC (human) | 0.977 | ||||||||
| Best auROC (mouse) | 0.982 | ||||||||
| Peak sets in benchmark (human) | 44 | ||||||||
| Peak sets in benchmark (mouse) | 119 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | POU domain factors {3.1.10} | ||||||||
| TF subfamily | POU5 (Oct-3/4-like factors) {3.1.10.5} | ||||||||
| HGNC | HGNC:9221 | ||||||||
| EntrezGene | GeneID:5460 (SSTAR profile) | ||||||||
| UniProt ID | PO5F1_HUMAN | ||||||||
| UniProt AC | Q01860 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | POU5F1 expression | ||||||||
| ReMap ChIP-seq dataset list | POU5F1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 26.0 | 260.0 | 97.0 | 117.0 |
| 02 | 37.0 | 265.0 | 40.0 | 158.0 |
| 03 | 195.0 | 22.0 | 20.0 | 263.0 |
| 04 | 10.0 | 32.0 | 12.0 | 446.0 |
| 05 | 36.0 | 11.0 | 14.0 | 439.0 |
| 06 | 52.0 | 157.0 | 258.0 | 33.0 |
| 07 | 190.0 | 18.0 | 16.0 | 276.0 |
| 08 | 88.0 | 125.0 | 50.0 | 237.0 |
| 09 | 442.0 | 10.0 | 16.0 | 32.0 |
| 10 | 7.0 | 1.0 | 8.0 | 484.0 |
| 11 | 6.0 | 4.0 | 461.0 | 29.0 |
| 12 | 7.0 | 380.0 | 47.0 | 66.0 |
| 13 | 395.0 | 10.0 | 15.0 | 80.0 |
| 14 | 310.0 | 30.0 | 127.0 | 33.0 |
| 15 | 415.0 | 18.0 | 34.0 | 33.0 |
| 16 | 80.0 | 69.0 | 61.0 | 290.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.525 | 0.726 | -0.25 | -0.065 |
| 02 | -1.189 | 0.745 | -1.114 | 0.232 |
| 03 | 0.44 | -1.681 | -1.77 | 0.737 |
| 04 | -2.394 | -1.328 | -2.234 | 1.263 |
| 05 | -1.215 | -2.311 | -2.096 | 1.247 |
| 06 | -0.86 | 0.225 | 0.718 | -1.298 |
| 07 | 0.415 | -1.868 | -1.975 | 0.785 |
| 08 | -0.346 | 0.0 | -0.898 | 0.634 |
| 09 | 1.254 | -2.394 | -1.975 | -1.328 |
| 10 | -2.694 | -3.903 | -2.584 | 1.345 |
| 11 | -2.819 | -3.126 | 1.296 | -1.421 |
| 12 | -2.694 | 1.104 | -0.958 | -0.628 |
| 13 | 1.142 | -2.394 | -2.034 | -0.439 |
| 14 | 0.901 | -1.389 | 0.016 | -1.298 |
| 15 | 1.191 | -1.868 | -1.27 | -1.298 |
| 16 | -0.439 | -0.584 | -0.705 | 0.835 |