Model info
| Transcription factor | Ppara | ||||||||
| Model | PPARA_MOUSE.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | SARAGGKSA | ||||||||
| Best auROC (human) | 0.483 | ||||||||
| Best auROC (mouse) | 0.863 | ||||||||
| Peak sets in benchmark (human) | 5 | ||||||||
| Peak sets in benchmark (mouse) | 20 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
| TF subfamily | PPAR (NR1C) {2.1.2.5} | ||||||||
| MGI | MGI:104740 | ||||||||
| EntrezGene | GeneID:19013 (SSTAR profile) | ||||||||
| UniProt ID | PPARA_MOUSE | ||||||||
| UniProt AC | P23204 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Ppara expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 42.0 | 299.0 | 117.0 | 42.0 |
| 02 | 453.0 | 21.0 | 14.0 | 12.0 |
| 03 | 347.0 | 41.0 | 107.0 | 5.0 |
| 04 | 469.0 | 0.0 | 29.0 | 2.0 |
| 05 | 22.0 | 3.0 | 469.0 | 6.0 |
| 06 | 10.0 | 1.0 | 442.0 | 47.0 |
| 07 | 12.0 | 41.0 | 103.0 | 344.0 |
| 08 | 22.0 | 396.0 | 48.0 | 34.0 |
| 09 | 436.0 | 24.0 | 13.0 | 27.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.067 | 0.865 | -0.065 | -1.067 |
| 02 | 1.279 | -1.725 | -2.096 | -2.234 |
| 03 | 1.013 | -1.09 | -0.153 | -2.961 |
| 04 | 1.313 | -4.4 | -1.421 | -3.573 |
| 05 | -1.681 | -3.325 | 1.313 | -2.819 |
| 06 | -2.394 | -3.903 | 1.254 | -0.958 |
| 07 | -2.234 | -1.09 | -0.191 | 1.004 |
| 08 | -1.681 | 1.145 | -0.938 | -1.27 |
| 09 | 1.241 | -1.6 | -2.163 | -1.489 |