Model info
| Transcription factor | PRDM4 (GeneCards) | ||||||||
| Model | PRDM4_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 16 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bbGGGGRGMCTTGAAA | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 130 | ||||||||
| TF family | Factors with multiple dispersed zinc fingers {2.3.4} | ||||||||
| TF subfamily | unclassified {2.3.4.0} | ||||||||
| HGNC | HGNC:9348 | ||||||||
| EntrezGene | GeneID:11108 (SSTAR profile) | ||||||||
| UniProt ID | PRDM4_HUMAN | ||||||||
| UniProt AC | Q9UKN5 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | PRDM4 expression | ||||||||
| ReMap ChIP-seq dataset list | PRDM4 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 19.5 | 22.5 | 58.5 | 29.5 |
| 02 | 16.5 | 24.5 | 43.5 | 45.5 |
| 03 | 2.0 | 2.0 | 119.0 | 7.0 |
| 04 | 1.25 | 0.25 | 128.25 | 0.25 |
| 05 | 0.25 | 0.25 | 129.25 | 0.25 |
| 06 | 3.25 | 1.25 | 107.25 | 18.25 |
| 07 | 30.0 | 9.0 | 83.0 | 8.0 |
| 08 | 10.0 | 4.0 | 109.0 | 7.0 |
| 09 | 28.0 | 86.0 | 1.0 | 15.0 |
| 10 | 0.0 | 128.0 | 2.0 | 0.0 |
| 11 | 0.0 | 0.0 | 0.0 | 130.0 |
| 12 | 9.0 | 0.0 | 6.0 | 115.0 |
| 13 | 3.0 | 0.0 | 127.0 | 0.0 |
| 14 | 130.0 | 0.0 | 0.0 | 0.0 |
| 15 | 130.0 | 0.0 | 0.0 | 0.0 |
| 16 | 130.0 | 0.0 | 0.0 | 0.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.487 | -0.352 | 0.572 | -0.093 |
| 02 | -0.643 | -0.271 | 0.282 | 0.326 |
| 03 | -2.35 | -2.35 | 1.271 | -1.412 |
| 04 | -2.615 | -3.135 | 1.345 | -3.135 |
| 05 | -3.135 | -3.135 | 1.353 | -3.135 |
| 06 | -2.021 | -2.615 | 1.168 | -0.549 |
| 07 | -0.077 | -1.194 | 0.915 | -1.297 |
| 08 | -1.101 | -1.866 | 1.184 | -1.412 |
| 09 | -0.143 | 0.95 | -2.722 | -0.732 |
| 10 | -3.322 | 1.343 | -2.35 | -3.322 |
| 11 | -3.322 | -3.322 | -3.322 | 1.359 |
| 12 | -1.194 | -3.322 | -1.542 | 1.237 |
| 13 | -2.079 | -3.322 | 1.336 | -3.322 |
| 14 | 1.359 | -3.322 | -3.322 | -3.322 |
| 15 | 1.359 | -3.322 | -3.322 | -3.322 |
| 16 | 1.359 | -3.322 | -3.322 | -3.322 |