Model info
| Transcription factor | Prdm5 | ||||||||
| Model | PRDM5_MOUSE.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | vMdGGAGvn | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.855 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 12 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | unclassified {2.3.3.0} | ||||||||
| MGI | MGI:1918029 | ||||||||
| EntrezGene | GeneID:70779 (SSTAR profile) | ||||||||
| UniProt ID | PRDM5_MOUSE | ||||||||
| UniProt AC | Q9CXE0 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Prdm5 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 123.0 | 188.0 | 159.0 | 30.0 |
| 02 | 155.0 | 263.0 | 59.0 | 23.0 |
| 03 | 146.0 | 27.0 | 67.0 | 260.0 |
| 04 | 3.0 | 0.0 | 491.0 | 6.0 |
| 05 | 4.0 | 9.0 | 481.0 | 6.0 |
| 06 | 391.0 | 3.0 | 18.0 | 88.0 |
| 07 | 34.0 | 18.0 | 434.0 | 14.0 |
| 08 | 245.0 | 97.0 | 145.0 | 13.0 |
| 09 | 164.0 | 91.0 | 116.0 | 129.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.016 | 0.404 | 0.238 | -1.389 |
| 02 | 0.213 | 0.737 | -0.737 | -1.64 |
| 03 | 0.154 | -1.489 | -0.613 | 0.726 |
| 04 | -3.325 | -4.4 | 1.359 | -2.819 |
| 05 | -3.126 | -2.484 | 1.338 | -2.819 |
| 06 | 1.132 | -3.325 | -1.868 | -0.346 |
| 07 | -1.27 | -1.868 | 1.236 | -2.096 |
| 08 | 0.667 | -0.25 | 0.147 | -2.163 |
| 09 | 0.269 | -0.313 | -0.074 | 0.031 |